Gene detail

Detailed information of RPACG02804.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02804.1	LOW DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING 4A	tig00000633	314760	329171	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG02804.1

CGCAAATTTATTAAATATAACATTGTTCAGATTATTATTACATTGTGGAAGTAGCTGGTACACACATGTTCGCTGGTGAGTAATTAAATATGAAAATACCAAGCAAAATGCAATAGAAGAATTGTCGTAAAACAGCACATCAACATTCAGCCCTATTTCCATCCTGGGTGCTTGCAAGAAAACCAAGCGCCAAACCGAGTGATGGACTACGAATTTAAGGTTAGATTGACTAACGAACGACAAAAAGTTGAAGATTTATTTGATTACGAGGGCTGCAAAGTCGGAAGAGGGACATACGGCCATGTTTACAAGGCTAACCCAAAGAAGAAAGAAAACAGTCCGGAGGGCTATGAGTATGCCTTGAAGCAAATTGAGGGAACTGGCATCTCTATGTCAGCATGCCGGGAAATAGCTTTGCTGCGAGAGCTGAAACATCCAAACGTGATCTGTCTACACAAGGTGTTCCTGTCTCACGCCGACAGGAAAGTCTGGCTTCTCTTTGAGTTTGCTGCTCACGATCTCTGGCATATCATCAAGTTCCACCGGTCAGCAAAGGCTAACAAGAAGGTGGTGAACGTACCGAAGAACATGGTCAAGTCCCTGCTCTATCAGATTCTTGATGGCATCCATTATCTACATTCCAACTGGGTGCTACACAGAGATCTAAAGCCGGCCAATATTCTTGTGATGGGAGAAGGGCCAGAGAGAGGCAGGGCGAAAATAGCTGACATGGGGTTTGCAAGGTTATTCAACTCTCCACTGAAACCTCTGGCTGACCTTGACCCAGTTGTGGTGACCTTCTGGTACAGGGCGCCTGAACTTCTTCTTGGAGCAAGACATTACACAAAAGCTATAGACATTTGGGCGATTGGTTGCATATTTGCGGAGTTGTTGACATCAGAGCCGATATTCCACTGTCGACAAGAAGACATAAAGACGAGCAATCCGTATCATCACGAGCAGCTAGACAGGATCTTTACTGTCATGGGCTTCCCACAAGAGAAAGATTGGGAAGACATCCGGAAGATGCCGGAATACCCAACACTAATGAAAGACTTTAAGAAATCAAACTATGTCAACTACAACCTCATGAAATACATGGACAAGCACAAGGTGAAACCGGACAACAAAGCCTTCCACTTGCTGCAGAAGATGTTGATTATGGACCCGACGAAGCGGATATCATCAGAGCAGGCCCTGCATGATCCGTACTTCTCTGAGGAACCTCTGCCGCATCCAGACATCTTTGAGGGGGCACCTATTCCATATCCAAAGCGAGAGTTCATTACAGACGATGACAATGATGACAAAGCTGACACTGGGGCAAGCAAGGTGGGTGGCCACAAAGCTGGCAACCAGGGCGCAGCATCGAACCCAAATCAACCCCCCAACAAGCGCATGAGACAGATGCCACCAACTACAACTAGTGGTACAGGTGGCATGACAAACTCTGAATACCAGCAAGTGCATCATGGGAACAATCAACACCAACCCGGCCTGGGTTTTGCTGCGTCGGGAAACGCCCAGTCAGGATCAAACGGATTTGGACAGCAACGTTTCTGAATGTTCACAAATACTCGAACTGGACTAAAATACAGAGGCCTAGCAACGCATCACACGTTGTACAATACAAGGGCATGTTTCACTCGGACAGCTTCATAGACAGCCATTTTCTCATCAGAACTAATAATAGGCTATGAAATGTCATTTTATTATCGACTGTTCTTGGCAATGTATAACGATCATGTAAAGAATGTTATTTTAGTGAATTAGACTGATATTTCACGGAAACTGCATCTAGTCGTGTCGTTCGTCACCAGTCAGAGTCTGACTACATTGGAGTTGCCTTTAGGTTTTCAATTAATTGCAACAGTGGATGTAATATTAGTCTACTACTGATACTATTTAAAACTATTGAGAGTTATCACTGATAGTGAGTCATCAGTATACATTGGAAAACCATCAGTTTCTGTTTGATAACCACCTTGCAGCACTACGGTTCCATATATGCATTACACCTAGGACGGCTCTTTCCTGGTGTATAATGTTACTGTAGTACTATCACCATAATCGGTATGCTATCACAATAATATTGCTTTATAATACTACAATGGCAATACTATTACAGTAGTTGCCACTGCTGTCTAGTATCACCTGTGTGGTTCGTGTTTTACTGACACCCAATGTGATTACGCAGCCTGTGATAGCGAACACCACCATTAAAAGTGCAGTAATGAAAACCGACATCCAAAAGTTGCTTGCTATGTAGTAAATAATAATCTGTTTCTTTAGCAAGTTGCAGACTTGATATATAAAGAAATTAATGACACAAATTAAATGCCCCTTTTGTAATTGTTGCAAAGGTGTTTACTTTGAAGATATGTGTGTGTATATATATATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR043445	Family	TMEPAI family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16514	LOW DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING 4A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0010991	Biological Process	obsolete negative regulation of SMAD protein complex assembly	Interproscan
GO:0030512	Biological Process	negative regulation of transforming growth factor beta receptor signaling pathway	Interproscan
GO:0031901	Cellular Component	early endosome membrane	Interproscan
GO:0060394	Biological Process	obsolete negative regulation of pathway-restricted SMAD protein phosphorylation	Interproscan
GO:0070412	Molecular Function	R-SMAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02804.1 global RNA-seq network