Gene detail

Detailed information of RPACG02710.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02710.1	CYTOKINE RECEPTOR	tig00000605	2347407	2347793	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG02710.1

MRTFGDRLSSPELFGKCVVVNEVDVDDMPCVTVVHRKVGPSDQLSQFVSLVVIGDYQQFYEKQKTPSVDQQASTPTEASTPIEASTPTETSTPIEASTPTETSTPIEASTPIEASTPIEASTPTETSTPIEASTPIEASIPTEASTHIETSTPTETSTPTETSTPIEASTPTETSTPTEASTPTETSTPIEASTPIEASIPTEASTHIETSTPTETSTPTETSTPIEASTPTETSTPTEASTPTETSTPTETSTHIETSTPTETSTPTETSTPTETSTPTETSTPTETSTPIEASTPTETSTPTETSTPTETSTPTETSTPTETSTPTEASTPTETSTPTETSTPIEASTPTETSTPTETSTPTETSTPIEASTPTETSTPTETSTPTETSTPIEASTPTETSTPIEASTPTETSTPTETSTPIEASTPTETSTPTEASIPTEGSTPIEASTPIETSTPTEASTPIEASTPTEAYTPTEASTPIEASTPIEASIPTEASTPTEASTPTEASTPTEAYTPTEASTSIEASTPIEASIPTEASTPIEAYTPTEASTPTEASTPTEASTPTEASTPIEASIPTEASTPTEAYTPIEASTPIEASTPIEASTPTEASTPTEAYTPTEASTSIEASTPIEASIPTEASTPIEAYTPTEASTPTEASTPTEASTPTEASTPIEASIPTEASTPTEAYTPIEASTPIEASTPIEASTPTEASTPIEASIPIEASTPIEASIPIEASTPTEASTPTEAYTPTEASTSIEASTPIEASIPTEASTPIEAYTPTEASTPTEASTPTEASTPTEASTPIEASIPTEASTPTEAYTPIEASTPIEASTPIEASTPTEASTPTEAYTPTEASTSIEASTPIEASIPTEASTPTEAYTPTEASTPTEASTPTEASTPTEASTPIEASIPTEASTPTEAYTPIEASTPIEASTPIEASTPTEASTPTEAYTPTEASTSIEASTPIEASIPTEASTPIEAYTPTEASTPTEASTPTEASTPTEASTPIEASIPTEASTPTEAYTPIEASTPIEASTPIEASTPTEASTPTEASTPTEASTPIEASTPIEASTPTEASTPTEASTPIEASIPIEASTPTEAYTPTEASTPIEASTPIEASIPTEASTPTEASTPIEASIPIEASTPIEASIPSEASTPTEAYTPTEASTPIEASIPIEASTPTEAYTPTEASTPIEASTPIEASIPTEASTPTEASTPIEASIPTEASTPIEASIPIEASTPTEAYTPTEASTPIEASTPIEASIPTEASTPTEASTPTEAYTPTEASTPTEAYTPIEASTPIEASTPIEASIPTEASTPIEASTPTEASTPTEAYTPTEASTPIEASTPIEASIPTEASTPIEASTPIEAYTPTEASTPTEASTPTEAYTPIEASTPIEASTPIEASTPIEASTPIEASTPIEAYTPTEASTPTEASTPTEAYTPIEASTPIEASTPIEASTPIEASTPIEASTPIEASTPIEASTPIEASTPTQPNVGYATQCAEIESQARIRCGARRVSEMYCKRQSCCWDRNARGNTIACYSKKCKPGYFGWRCRFQCHCQVGETCDSITGLCPSGCPENRWGVGCRLSSECTYNDPTGEHYRGRRTRTDKGYTCLLWSRQMSYDDSSFSRESRNDAGSFCRNPSPQSTKTWCYYRLYRGSSGRYDYCTINPCRCLRGRFGVNCESECHCNQISEDCQVDAGQCQSGCASHFTGSTCQACSDGWFGVNCQFRCNCKDPDETCDVNGRCQSGCQPNYAGDSCLIEIPVLTRPPTKRSRKINSITLEWLPWTRPPDLGEGPVTAYIVYYRRRWSKHVVWKQTTITPELHMMVRNLLPRVHYIFKVMPLHEQGFEGQPSPETSITTCSAPSRGVQNMHIETKDHEGSNFTTLTVSWELPEPQFWNCDRIVKYRVMHQAVLRPQYVRDRMIEIENVNMYENYTISVTLINDVNRQGYRTSITYIARSGPVRDVHVSDVTSTTVRVNWLPPSVTVGDVSHYSISYEVIQMSDCPAEDVDVAPLQVDISSHQHTYVLSGLHPFSQYRVTVWAETAAGPGRGIFSTVTTQPSVPTAEVKGLYRAEVRSILARLAWQTQPCEGRNGRFFTYRYHVWQQGVPAMQYNGAVNVTEVQLVDLVPYTTYLAQVWFVNHIGEGPRCSPLEFRTLQSRPPEPRNVALQNMRSDSITISWEPPYPSHGVLTAYEIKYNPGLGESDPYLVTVSVQTLQYRIYHLTINTSYQVQVRAYTSVGSGPWSEMLIGVTKESYPEKPGSVRNVTRTTNSITLRWTPPKNTNGMIQTFKVGCEPVISSSMLPKFVVAAVEVLATQHEATVEDLQSGRPYICSVAASTVKGYGPSTSMTVWTKPLAPVRPGEPKLASTSTDTTVALRLHDDKQPSAVAHSLRAYLVVVEELPHSTRKRRAVPDTPCGLAPDQLLPYDAAQLRGYRCYVAAQLEDSHLPDVFVLGDNQTYGGFHNVPLKKEQNYNVWFGVIVVVDGETAVSFSRTAKPVVAGQLAVSKGIGMSLVLVAAIISAVILILIIIIIIVLTTRRKKQAEQKQSHATSAESELLRVPPPIQASPDQLDSVLLPDVCCTEDEPIDYRETSLSTELTECCSKPVTLSNLCNYVKEKKAGRINELVQEFDELPHGLRVKADIAKDPENKLKNRYGNIIAYDHSRVVLDDHPLESSLGYINGNYIDGYKRPNAYIATQGPSKHTLGDIWKMAWQRNCHRIIMVTNLVEDGRRKCEQYWPDMDSATYADFEVTKIEEEQYADFIIRVFSLTRGVITKTIRQFHFTSWPDHGVPMYATSLLAFRKKVRVYDDPTAGPTIVHCSAGVGRTGTFIALDYLLDQAKAEGCVDVFKCVYNMRMKRVNMVQTQEQYVFVYDALLEAFKSGDTAVPCVDFRKRFMELSRVNPQTGKLRLLEEYELLQAMSPVNTTSGCQDAVAAENISKNRSMQILPLDNVSRPYIQMYIPLSTDYINAVFSDGYKQRDAFIITQMPLPTTVTDFWAMMIDHKCKSIVMMNEMNAADVTSACYFPNEGASWAFGPFTVKTVSVQTINTDVTIRNLTVMYNKKPGEIQCVQQFHYHGWPENNTLPTSLSSLISLLSVVQRWQQRSGNRPIVVHCMDGATRSGLFCAVSYMVEHLKVEQEVDVFQSVKHVRINRPQLIPTFEQYKFLYEMAVEYMDCFETYSNFK

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00051	Kringle	Kringle domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF06131	DUF963	Schizosaccharomyces pombe repeat of unknown function (DUF963)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000001	Domain	Kringle	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000519	Domain	P-type trefoil domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR009306	Repeat	Protein of unknown function DUF963	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR018056	Conserved_site	Kringle, conserved site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR038178	Homologous_superfamily	Kringle superfamily	Interproscan
IPR044913	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:1990264	Biological Process	peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02710.1 global RNA-seq network