Gene detail

Detailed information of RPACG02633.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02633.1	GLYCOGEN DEBRANCHING ENZYME	tig00000605	1066844	1070230	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG02633.1

MIAVRRKLNELHAELGKKGYDHIYVDKLNTDIVSVTRHNPVSHQGVVMVVRTAFHHLSSNDINISMSFPGQIAEVLLEAHVVQRTGGVQYSRDPRYLNGLPNYTLKMRENMKIDESRMVKLKDTSTSEKSDVDFHCFTPGSIICFKVTLNSRQKSAILNVRQMLSQFGYRMRTYSGRTLQEITSTDLERITTNLSLNDLNRVLFRVGGEESDDGFGFGAYNIPGYGDLPYCGLQGIVSVLRNIRKSNDLGHPLCANLRNGDWLLDYIVNRLKVHPGTKQLGMWFETTFSNLRRAPRYLIPCYFDAIIFGVYTIVEEVAWASMSDFVQRGSSFERSLAMGSLQFVSFVKTAKLPQLSPNLEAPQPKIETLYEGVPQEITLSMAAGLPHFSSGIWRNWGRDTFISFRGLLLITGRYEDARFLILAYASTLRHGLIPNLLGGGISPRYNCRDAVWWWLQCIQEYCMMVDGGHKILKDNVSRIFPTDSSMPHPPGDKTVILADSAGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSAGVVLLHTVILADSAGVVLLQTVILADNGGVVLLQTVILADSAGVVLLQTVILADSGGVVLVQTVILADSAGVVLLQTVILADSAGVVLLQTMILADSAGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILTDNAGVVLLQAVILADNAGVVLLQTVILADSAGVVLLQTVILSDTAGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSAGVVLLQTVILADNAGVVLLQTVILADNAGVVLLQAVILADNAGVVLLQTVILADSGGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSAGIVLLQTVILADNAGVVLLQAVILADNAGVVLLQAVILADNAGAVLLQTVILADNAGAVLLQAVILADSAGVVLLQTVILADNAGVVLLQTVILADNAGVVLLQAVILADNAGVVLLQTVILADSGGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSAGIVLLQTVILADNAGAVLLQAVILADNAGVVLLQTVILADNAGAVLLQTVILADNAGAVLLQTVILADNAGVVLLQAVILADNAGAVLLQTVILADNAGAVLLQTVILADNAGAVLLQAVILADNAGAVLLLTVVLADNAGAVLLQAVILADNAGAVLLPTVVLADNAGAVLLQTVVLADNAGAVLLPTVILADNAGAVLLQAVVLADNAGVVLLQAVILADNAGAVLLQAVILADNAGVVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQTVILADSAGVVLLQTVILTDNAGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSVGVVLLQTVILADNAGVVLLQTVILADNAGVVLLQAVILADNAGVVLLQTVILADSGGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSAGIVLLQTVILADNADVVLLQAVILADNAGVVLLQAVILADNAGAVLLQTVILADNAGAVLLQAVILADSAGVVLLQTVILADNAGVVLLQTVILADNAGVVLLQAVILADNAGVVLLQTVILADSGGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSAGIVLLQTVILADNAGAVLLQAVILADNAGVVLLQTVIPADNAGAVLLQTVILADNAGAVLLQTVILADNAGAVLLQTVILADNAGAVLLQTVILADNAGAVLLQAVILADNAGAVLLPTVVLADNAGAVLLQAVILADNAGAVLLPTVVLADNAGAVLLQTVVLADNAGAVLLPTVILADNAVAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGVVLLQTVIPADNAGAVLLQAVVLADNAGVVLLQAVILADNAGAVLLQAVILADNAGVVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQTVILADSAGVVLLQTVILTDNAGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSVGVVLLQTVILADNAGVVLLQTVILADNAGVVLLQAVILADNAGVVLLQTVILADSGGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSAGIVLLQTVILADNADVVLLQAVILADNAGVVLLQAVILADNAGAVLLQTVILADNAGAVLLQAVILADSAGVVLLQTVILADNAGVVLLQTVILADNAGVVLLQAVILADNAGVVLLQTVILADSGGVVLLQTVILADSAGVVLLQTVILADSAGVVLLQTVILADSGGVVLLQTVILADSAGIVLLQTVILADNAGAVLLQAVILADNAGVVLLQTVIPADNAGAVLLQTVILADNAGAVLLQTVILADNAGAVLLQTVILADNAGAVLLQTVILADNAGAVLLQAVILADNAGAVLLPTVVLADNAGAVLLQAVILADNAGAVLLPTVVLADNAGAVLLQTVVLADNAGAVLLPTVILADNAVAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGVVLLQTVIPADNAGAVLLQAVVLADNAGVVLLQAVILADNAGAVLLQAVILADNAGVVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVVLADNAGAVLLQAVILADNSGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVVLADNAGAVLLQAVVLADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGAVLLQTVILADNAGAVLLQAVILADNAGAVLLQAVILADNAGVVLLQAVILADNAGAVLLQAVILADSAGVVLLQTVVLADNAGAVLLQAVILADNAGAVLLQAVILADSAGVVLLQTVVLADNAGAVLLQAVILADSAGVVLLQTVVLADNAGAVLLQAVILADNAGAVLLQADQPLHNVMQEALQKHAEGLKFRERGAGPDIDRDMSDAGFSVQIGVNWKTGFVFGGNEHNCGTWMDKMGSSEGANNKGVPATPRDGCAVELVGLCKSTVRWLHLMYEHGKYPYRGVEKVEDGNRVAVSFGEWDKLIQTNFEKYFWINTAPDPKTENAPGLINKRGIYKDVVGASHVWTDYQLRPNFTIALVVAPELVDPEHARIALGQAQKHLLGPLGMKTLDPSDMQYRGSYNNGDATNGFNYHQGPEWLWPVGFFLRAKLHFAALDRNNPSKLTDTVLLVKRVLARHNVQIHLSDWKSLPELTNENGMFCPDSCGAQAWSMGCVLEVLYMLEHLSAFSATP

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06202	GDE_C	Amylo-alpha-1,6-glucosidase	Repeat	Interproscan
PF14702	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008928	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR010401	Family	Glycogen debranching enzyme	Interproscan
IPR032788	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR032790	Domain	Glycogen debranching enzyme, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004134	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005980	Biological Process	glycogen catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02633.1 global RNA-seq network