Gene detail

Detailed information of RPACG02580.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02580.1	MYELIN TRANSCRIPTION FACTOR 1-RELATED	tig00000605	113317	171535	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG02580.1

ATGGAAGAACACGAGACGTCGAGACGACGCCCGAAACAGCTGGTCGCCAGGTGGTGCCAGCGGTTGTTGCTGAAGCACGACTTCGCCGACATGGATATGAGGGCGCTCTTCCACTGCTACATATACAGACTGAATCTGAAGTCACTCCAATCAATTATAACCTTGTACATCATCGCGAACATTGCAATGACGACATTGGACGTCGCATTTCTCTCATACATTACCGTGGTTGACATATGTCTCATTGTATTGACAGTTATTCTCATAATACCGCTCGTTTTCCGGCGCACACGGTACATGCAGATCGCATACATCCGGGTCATCAGCTACCTAGTGCTGTTTCTCGGCGTCTGTTTCTCGCTACTCGCCCTTCCCATCAACCGCCCCGTGTCGGCCGTCACCACTTGCTCCGGGGCCAGCGGCGTCTGGCAGATCACGTGGAATATATTTGTGTCGTATGCCTTTTTGCCGTTGAAGACTCACACGCTGGTCATCAGCGGCGTGTTGCTCGCCTTGGCACACGTAGCTGTCACTTTGGCACTCAGCTGTGCCTCGGCCCTGGCGCTGTGGCGACAGGTTTTGGCTAACCTCGTCATATTCACGGTATCTAACGCAGTGGGCATGTACATTCACGACCGGAAGTTGTGTGCCTTGAAAACACTTTTCTCGGATACGTACAAATGTGTTATCGCGAGACTACACATGGAGGACGAAAACGAAAAACTGGAGAAGTTATTGCTGAGCGTGATGCCGCGACACGTTGCCATGGAGATGAAGAACGACTTACGTATGAGTCAGCACAAGAAGGGAATGTTCCACAAAATCTACATTCAGCGACACGACTCCGTCAGCATCCTGTTCGCCGATATCGTAGGCTTCATGGAATTGTCGTCGCAGTGCACGGCCGAGGAAATGGTGAAGATCCTCAACGAACTCTTCGGGCGCTTCGATCAACTCGCCGAGGAGAACAACTGTATGCGGATCAAGATCTTGGGAGACTGCTACTACTGCGTAAGCGGCCTGAACGAAAGGAGAACGGACCACGCCAAGTGTTGTATAGAGATGGGGCTGGACATGATTGACTCAATCAGAGGCGTACGGGCAGCGACTGGCGTGAAGCTGAACATGCGAGTTGGCATACACACGGGTCGGGTGCTTTGCGGAGTTCTCGGGCTCAAAAAGTGGCAATATGACGTGTGGAGCGATGACGTCACTTTGGCAAACCACATGGAAGCTTCCGGTGTGCCTGGGAGGGTGCATATCACGAAGCCGACCCTCGATCATCTCGAAGGTTTGTACGACGTGGAGCCGGGCAACGGTGGCGAACGTCATCCCCGTATTCGGGAAAAGGGAATCGAGACGTTTCTCATTTCAGCCGGACATCACCGCCAACAATCAAGTATATTCCGCGGCAAGACCGGAAAGAAGTACGGACGCCTATCGTTTAAGAACGTCAGCAGCGTCATCATGCGGCTGATGTCAGCACTAAAATTCAACGTACAGCTTCCATTCTCCGACTTGCTGCAGCCCTGCAGGGACGAGAAGGCGCGGTCGACGCTGGGTCAGAAAATGGCAGACACATTTATGAAACCCTTTAAGAAAAGACAGGGTAGTCAGAAGATAACTGAAGACCGAGTATTCAACTATATGAAGGATGCAGTGAGAAGTAAAAAGACCTACAAAAAGAAAAAAGATCACGTTAACTGGGCAACTCTCAAGTTCAAGCGGATGTTAAGAGAACACAGGTATGGGCGCCTGGAAGACGAGCAGTTCGCTGTCAGCGTCGTATGTTCTCTCGTCATCCTCGTCTTGAGCGCCATTCACCAGGTGTTCGTGCTGCCAATAACAGTGGTTCTCCTGTCCATGTCTCTCGTCAGTATCGCCATCACAGTTGGGCTTCTGCTTCTCTTGCTTCCAACAAGAATCCAGCAATGGTACTGGTTGAAGTGTGACAACCCACGTTCAGGAATGATGCAGTTCCTCGTCACCATATTGGTCATCTTTCTCATCTACGTCGTAGGCCAAGCGAACGTCTTCTGTTGCGCTGGCGGAGTGTTTGACGACGTGTCGACGCTACAGAGGCCGTGTCATGAGCCGTATTACATCTACCTCAGTTGCATCATTACCTACATGGCGGTGGCCGTCTTCCTCAAGCTCAGCGCCTTCGTTAAACTCATCGTCATGGTTGTCATGACAACGGGGTACGCCATCCTGATTGGCTACACGCACCAGCGAGTCTTCACACAACTGGACCAGCAACATAGTTTGAAAGTTCCTTCACAATTATCCGCTGTGGTGGCGCTGGCCGTCTTCCTGTTGACCGTCTTTCTTCACGGCAGACATATTGAATGGATATATAGGCTTGACTTCATATGGAATGACCAGGTGGCGGAGGAGCGGATAGAGATGATGGAGTTACAGACGCAGAACCAGCAGATCCTGTGCAACATGCTCCCGACCCACGTCGCCCAGTATTTCATCAACTATGCATCAAACACGGAAGTTACTTTGTACAGTCAAGCCTACGACCGAGTCGGCGTCTTCTTTGCATCCGTACCCAACTTCGCCGACTTCTACATGGAGCTGGATGCTAATAACCAAGGCCTCGAGTGTCTAAGGCTGCTCAACGAGATCATCGCAGACTTCGACGAGTTACTCAACGAAGAAGAATTCAAAACGATGGACAAGATCAAGACAATGGGCAGCTGCTACATGGCAGCAGTGGGACTGACTCCGGACAGTCCCGTCCAGGACACGGAGGTCTCTATTCACCACCACCTCAGCGTCCTGGCCAACTTCATATTTGCGATGAAGGCAAAGTTGGCAAATATAAACGAGAACTCATACAATAACTTCGTGCTGAGAGTTGGTATAAACATTGGTCCCATAGTGGCAGGTGTCATAGGCGCAAGCAAACCTCAATACGACATATGGGGAAACACAGTGAACGTGGCCAGCCGCATGGAGAGTACTGGCGAACCGGGGCAAATACAAGTGACGGAAGACGTGCATCATCCATTACGAAACAGCTACAACTTCAAATGTCGAGGATCGGTAAACATCAAAGGGAAGGGGGAGATGACGACATACTTCCTTCTCGGGAAGAAACCCCATTCATCGGGCAGCACGACCGACCTATCCAGCTCATGCAAAAAAGAACCCGCCGTCTTCTACATCGGCAACGAAAACTTCAATCGGCAGAACTCACACGGTAGTTGCACTTATAAGGAATTGAACGAGAGTAATGCAGCAGCGTCATCGCCGACACGCATGGCTGATTTCGCGCCACAGAGGAGATCGTCATTCCGCGTTACTTCATCCGAGACGGAGCCGAATCTGGCGTTGGATGCCAAAGAGACACACAGACTGACGACATCTGCTGATCCCCTCAGAGACCTTCCCGAGGTGCATTACCGGAACTTACACATGACGCCTGCGCTGAATGACGCGTCGTAG

Transcript

RPACG02580.1

CCCGCCTAGACTGGGGCGTCACTAATATAGCGGCGTGGTTGTGCTGCTGACGGCGAGCGATGCGGCAGTCTGGCCGGCGAGCAGGCTATCTTCCTCCGTCGGCGACCGACACGAACAGCGAGCGCTGTAGTCTATCGGGCTAACCTCCGTTCCGCATACCAGGCTGGTTGGTCGACAGGCTGCGCGCACTACATAGCACGGACTGTGACCTGGTCGGACAAGTGGCTGGCAGTGCACGACGGGAAGATGGAAGAACACGAGACGTCGAGACGACGCCCGAAACAGCTGGTCGCCAGGTGGTGCCAGCGGTTGTTGCTGAAGCACGACTTCGCCGACATGGATATGAGGGCGCTCTTCCACTGCTACATATACAGACTGAATCTGAAGTCACTCCAATCAATTATAACCTTGTACATCATCGCGAACATTGCAATGACGACATTGGACGTCGCATTTCTCTCATACATTACCGTGGTTGACATATGTCTCATTGTATTGACAGTTATTCTCATAATACCGCTCGTTTTCCGGCGCACACGGTACATGCAGATCGCATACATCCGGGTCATCAGCTACCTAGTGCTGTTTCTCGGCGTCTGTTTCTCGCTACTCGCCCTTCCCATCAACCGCCCCGTGTCGGCCGTCACCACTTGCTCCGGGGCCAGCGGCGTCTGGCAGATCACGTGGAATATATTTGTGTCGTATGCCTTTTTGCCGTTGAAGACTCACACGCTGGTCATCAGCGGCGTGTTGCTCGCCTTGGCACACGTAGCTGTCACTTTGGCACTCAGCTGTGCCTCGGCCCTGGCGCTGTGGCGACAGGTTTTGGCTAACCTCGTCATATTCACGGTATCTAACGCAGTGGGCATGTACATTCACGACCGGAAGTTGTGTGCCTTGAAAACACTTTTCTCGGATACGTACAAATGTGTTATCGCGAGACTACACATGGAGGACGAAAACGAAAAACTGGAGAAGTTATTGCTGAGCGTGATGCCGCGACACGTTGCCATGGAGATGAAGAACGACTTACGTATGAGTCAGCACAAGAAGGGAATGTTCCACAAAATCTACATTCAGCGACACGACTCCGTCAGCATCCTGTTCGCCGATATCGTAGGCTTCATGGAATTGTCGTCGCAGTGCACGGCCGAGGAAATGGTGAAGATCCTCAACGAACTCTTCGGGCGCTTCGATCAACTCGCCGAGGAGAACAACTGTATGCGGATCAAGATCTTGGGAGACTGCTACTACTGCGTAAGCGGCCTGAACGAAAGGAGAACGGACCACGCCAAGTGTTGTATAGAGATGGGGCTGGACATGATTGACTCAATCAGAGGCGTACGGGCAGCGACTGGCGTGAAGCTGAACATGCGAGTTGGCATACACACGGGTCGGGTGCTTTGCGGAGTTCTCGGGCTCAAAAAGTGGCAATATGACGTGTGGAGCGATGACGTCACTTTGGCAAACCACATGGAAGCTTCCGGTGTGCCTGGGAGGGTGCATATCACGAAGCCGACCCTCGATCATCTCGAAGGTTTGTACGACGTGGAGCCGGGCAACGGTGGCGAACGTCATCCCCGTATTCGGGAAAAGGGAATCGAGACGTTTCTCATTTCAGCCGGACATCACCGCCAACAATCAAGTATATTCCGCGGCAAGACCGGAAAGAAGTACGGACGCCTATCGTTTAAGAACGTCAGCAGCGTCATCATGCGGCTGATGTCAGCACTAAAATTCAACGTACAGCTTCCATTCTCCGACTTGCTGCAGCCCTGCAGGGACGAGAAGGCGCGGTCGACGCTGGGTCAGAAAATGGCAGACACATTTATGAAACCCTTTAAGAAAAGACAGGGTAGTCAGAAGATAACTGAAGACCGAGTATTCAACTATATGAAGGATGCAGTGAGAAGTAAAAAGACCTACAAAAAGAAAAAAGATCACGTTAACTGGGCAACTCTCAAGTTCAAGCGGATGTTAAGAGAACACAGGTATGGGCGCCTGGAAGACGAGCAGTTCGCTGTCAGCGTCGTATGTTCTCTCGTCATCCTCGTCTTGAGCGCCATTCACCAGGTGTTCGTGCTGCCAATAACAGTGGTTCTCCTGTCCATGTCTCTCGTCAGTATCGCCATCACAGTTGGGCTTCTGCTTCTCTTGCTTCCAACAAGAATCCAGCAATGGTACTGGTTGAAGTGTGACAACCCACGTTCAGGAATGATGCAGTTCCTCGTCACCATATTGGTCATCTTTCTCATCTACGTCGTAGGCCAAGCGAACGTCTTCTGTTGCGCTGGCGGAGTGTTTGACGACGTGTCGACGCTACAGAGGCCGTGTCATGAGCCGTATTACATCTACCTCAGTTGCATCATTACCTACATGGCGGTGGCCGTCTTCCTCAAGCTCAGCGCCTTCGTTAAACTCATCGTCATGGTTGTCATGACAACGGGGTACGCCATCCTGATTGGCTACACGCACCAGCGAGTCTTCACACAACTGGACCAGCAACATAGTTTGAAAGTTCCTTCACAATTATCCGCTGTGGTGGCGCTGGCCGTCTTCCTGTTGACCGTCTTTCTTCACGGCAGACATATTGAATGGATATATAGGCTTGACTTCATATGGAATGACCAGGTGGCGGAGGAGCGGATAGAGATGATGGAGTTACAGACGCAGAACCAGCAGATCCTGTGCAACATGCTCCCGACCCACGTCGCCCAGTATTTCATCAACTATGCATCAAACACGGAAGTTACTTTGTACAGTCAAGCCTACGACCGAGTCGGCGTCTTCTTTGCATCCGTACCCAACTTCGCCGACTTCTACATGGAGCTGGATGCTAATAACCAAGGCCTCGAGTGTCTAAGGCTGCTCAACGAGATCATCGCAGACTTCGACGAGTTACTCAACGAAGAAGAATTCAAAACGATGGACAAGATCAAGACAATGGGCAGCTGCTACATGGCAGCAGTGGGACTGACTCCGGACAGTCCCGTCCAGGACACGGAGGTCTCTATTCACCACCACCTCAGCGTCCTGGCCAACTTCATATTTGCGATGAAGGCAAAGTTGGCAAATATAAACGAGAACTCATACAATAACTTCGTGCTGAGAGTTGGTATAAACATTGGTCCCATAGTGGCAGGTGTCATAGGCGCAAGCAAACCTCAATACGACATATGGGGAAACACAGTGAACGTGGCCAGCCGCATGGAGAGTACTGGCGAACCGGGGCAAATACAAGTGACGGAAGACGTGCATCATCCATTACGAAACAGCTACAACTTCAAATGTCGAGGATCGGTAAACATCAAAGGGAAGGGGGAGATGACGACATACTTCCTTCTCGGGAAGAAACCCCATTCATCGGGCAGCACGACCGACCTATCCAGCTCATGCAAAAAAGAACCCGCCGTCTTCTACATCGGCAACGAAAACTTCAATCGGCAGAACTCACACGGTAGTTGCACTTATAAGGAATTGAACGAGAGTAATGCAGCAGCGTCATCGCCGACACGCATGGCTGATTTCGCGCCACAGAGGAGATCGTCATTCCGCGTTACTTCATCCGAGACGGAGCCGAATCTGGCGTTGGATGCCAAAGAGACACACAGACTGACGACATCTGCTGATCCCCTCAGAGACCTTCCCGAGGTGCATTACCGGAACTTACACATGACGCCTGCGCTGAATGACGCGTCGTAGCCAAAGTGTGCTACGAACGATGATATTTACTTAAGTGTTTTGTTTGTAAGAGTCAGTGATTGTATTGTGTATTTTTATGACCGAGTAAATGTGACAGGTATGCGTGCAATGATGGTGGTCGTGAACAACGCATAACGCATCTGTGGACTAACTCATTAACTACAAATAAATTAACAGACGACAAATAACTTCTCTGGATCCTGTCGAAACCTTTAGCCGAACTAGCAATACATTAGGGATTTAACGATTTAACGGACTAACAATAACAACATGAAGAAGACATGATATTATGTACATATTCTGATGTATTTTCTCCTAAAAATCAACTGCCCATTTTATGCTTAGAGATAAACACAGAAATATATAAAATGTAATAACATCGTATAAATGGCTAATATAAAACGTTTTCTAAACAATTAACCAACATTATCACAGTATAATTTATGCTGAAGCAAACCGTATTCAGTACACGTACTATACAAATATACCTACATTATTATTATGCTGACACGTGCCAATGTACTATTACGATACAATAGTTTCATGGTAATATTCAACAAATCACAAGAAAACATCCACAAAAGGATGACGTGACCTACATAGTTTAGGAAGGCAAAATTTTAATTAAATGTCGCCTTCCTACTCCATGTAATGCAATCATCTACAAAAATAACATGGCCTATGTTTACTTACGGTACTATTCCCATATACACACACTATAACATTTGTACCGTTTGCTATTGCCATGTTTTTGTTGTACTGAACATCATCAAATGTATATATTCCTGTGGCATACCATATACATATATGTAACTTCACCAAAGGATAATGTGCCACACTAACTTGATGCATTGTTAATCGGAAAATAGCATTTTAACAACTCCTTTCAGGTGGATTCTGTGGAAAAATAATGTGTATATTTAGTCAATATTAAGTGACTTTTGTTGACGGTATATAACAAAACATGACACAAAGACAGGACCTACATTCTAAGACATACATGCACATTTAATAAGCTGTCTATTCATGAGTCTATCAAGTTTCATGCGTTTTTCGATATTTTGCCCTTCTTCTGAGTGGAAATGTTGCGTTGAATGAAGACACCTTCATCGAGCTTTCTAGCAGAAGACTTCTTCTTGGTTTTCTTTCTCGATGCAGCTGCCCGCTTCTCTGATGGGTAGTCATCTTCATCCTGAGGATGACAGAATGAGCGTTGTGAATACAAATGCATCACAGCAGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01530	zf-C2HC	Zinc finger, C2HC type	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002515	Repeat	Zinc finger, C2H2C-type	Interproscan
IPR036060	Homologous_superfamily	Zinc finger, C2H2C-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10816	MYELIN TRANSCRIPTION FACTOR 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02580.1 global RNA-seq network