Gene detail

Detailed information of RPACG02535.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02535.1	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44	tig00000596	2537437	2565886	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG02535.1

ATGAAGACGCACATAGACGCGGCCGCTGAGAAGCTACGGTCTTCGAAAAATTCCTTCTATCGGTACGTTAATCCCGTAACGATTGGCACAGTGACGGCCGCGTCGATCTACCCAGTAACTCTGAACGCTGCACACCAGTTCAAGTTCGCTCTACCGCTGGCCGAACGATGGCTGGCCGTCTCCCGAACGTTCGGCACCGTCCCCGCTCGCGTCTACTTCATTGTCGTTGGCTTCTCGCTCGGCTACGGTTTATCAAAAGGGCTTGGGTGGTTGAGGACGAAACTGCTTGAAGTCTTGTTCCGTTACCAAGGCTGGACTAACGGCCGTTCTGTGACAACGAAGGTGTGGAGCGTTCTTGTGACATTGGTTAGAGGACCAGGCCCATTTCCCACCTATGCATTTGAATCTGTTCTGCCAAGGCAGCCGTTGCCTGACCTCGACAGCACACTGGACACGTGGCTTGGCGTGGCCCGACAGCTACTCAACAAAGACGAGTTTGAAATGACTGAGGAGGTCGTTGAAGAATTCCGTCACAAAGAGGGAACAAGACTACAGGCATTCCTGAGAGACAGAGCGGCTAAGAATATCAACTGGCTGTCAGATTACTGGCTTGCGGCAGCCTACCTGTCTTCACGGGATCCAATTGCAGTGAGGTCGAACTACTACCAGAGTAGTCGTGTGAATGGCATCAACGATCAGATTGTACGCGGAGCGAGTATGCTGCGTCAACTCATCCAGTTCTATGAACTGTTGAACAATGAGAGTTTCCCCGCAACCCTCATGCAAGGTCTCGTACCCCTCTGCATGAACGGCTTCAAATATGTCTTCAACTCTGTGAGACTGCCCGGGGAATACATGGACACCCCCGCTGTCTTCCCAGGCCACGCCTACATTGTTGTCATCAGGAAGGGTCACTACTTCAAGCTGGACATCTATGCGACTTCGGCCACTGGTCAGAGGTCCCTGCTGACCGCCACTGAACTGAAGCAGCAGCTACAAAATATCTGTGACCAGGCAGAAGAATTGGAGGATGAACTGAGTGTGGCCGTTCTCACGTCACAAAACAGGGCTATCTGGGCGAAGCAAAGAGAGGTGTTGGCAGAGAAGAACAAGCTGACTTTGAAGACAGTTGAGGCCTGCGCGTTTGTCTACTCTCTTGATTCAGAAACTCCTACGGACTGTGATGAATGTTGCCGATTTGCCATGACCGGAAACGGCAGCAACCGATGGTTTGACAAATGCTTCACGTCCATAGTTTACCCAGGAGGCACTGCGGCTGTTAACGTTGAGCATTCCGTCATAGATGCTACGGTGTTTGGCTCTGTTGCTGAGTACTGTGTCGGAGGGGAACGCTACGAAAATGGTGATATCATCCCTGACCCTCCACACGCCCCTCGGACGGTGAATCCCCCAGTCAGACTCGAATGGGACCTGTCGGACGTCAAAGAAATGATCTCAGTGGCTATGCAAGATTTCCATCAACTGGCTGACTCGATTGACCTGACAGTCCTCCACGCACCCTACAGCAAAGGCCTGATGAAGAAATTCCGCATCAGTCCAGATGGCTACATCCAGATGGCCATACAGCTGGCATATTATCGCCTGCACGGAGAGTTTGTCAAGACATATGAGCCATCAACTCACAGGTTGTTTGCTCTGGGACGCACCGAGACAATCCACCCAATCTCTGACGACTCAAAGGCGTGGGTGCAAGCGATGCAGCCAGACAGCACTGTAGATGGCGCCACCAGAGTGCGCCTGTTGAAGAGTGCCATAGCCCACCAGATGACCTTCCGGTTGAAGTCTACCCAAGGTCACGGCTGCGACCGCCACCTGCTTGGACTCTACTGTGCCTCTCGGGAACTGGGCATGGATATCCCTAAGATCTTCATGGACAAGGCGTGGAGACTTCCATTCAAGCTGTCATCTTCCCAAACTCCCACTGCCGTGTTGAGCTTCAAGCCCGACATGGACCAGAAATGGTGGGGCGGTGGCTTCGCTCCCGTGTGTGATGAAGGCTATGGCATCTCCTATGTGTTTGTCGGCGACGAAAATCTTAACATCAACATCACCAGTTGGATGGGTTGCGGAGAGACAAACTCGAGGAGGTTCTCCAAGAGCTTGAATGATGCCATGGAGGATATGAAGACTCTACTCTCTGCAAAGTAG

Transcript

RPACG02535.1

GGAAGTATCAAGCGCTTTTTCGGGAAGCGTTTTTTTTTATAGGTAGGCGTAACAAACAGTCGTATTTATTTGCAGCTTTGACCGCGACGATACCACATATTTTGTGGATTTGGCGATTGTTTCGTGACCGCCTGTTGGACGTTGAATAACAAGCGCGCCGAAGGGCGCGTCGATCGTTAATTATTGACGGACAACCACCTATTTTAAGGACGCGAGACCTGCGGTCACGGCTAGGAAAGATCGGCGCGCCACTCGACAACACAGTGCAGCCACAAGCTACAACGGACATGAAGACGCACATAGACGCGGCCGCTGAGAAGCTACGGTCTTCGAAAAATTCCTTCTATCGGTACGTTAATCCCGTAACGATTGGCACAGTGACGGCCGCGTCGATCTACCCAGTAACTCTGAACGCTGCACACCAGTTCAAGTTCGCTCTACCGCTGGCCGAACGATGGCTGGCCGTCTCCCGAACGTTCGGCACCGTCCCCGCTCGCGTCTACTTCATTGTCGTTGGCTTCTCGCTCGGCTACGGTTTATCAAAAGGGCTTGGGTGGTTGAGGACGAAACTGCTTGAAGTCTTGTTCCGTTACCAAGGCTGGACTAACGGCCGTTCTGTGACAACGAAGGTGTGGAGCGTTCTTGTGACATTGGTTAGAGGACCAGGCCCATTTCCCACCTATGCATTTGAATCTGTTCTGCCAAGGCAGCCGTTGCCTGACCTCGACAGCACACTGGACACGTGGCTTGGCGTGGCCCGACAGCTACTCAACAAAGACGAGTTTGAAATGACTGAGGAGGTCGTTGAAGAATTCCGTCACAAAGAGGGAACAAGACTACAGGCATTCCTGAGAGACAGAGCGGCTAAGAATATCAACTGGCTGTCAGATTACTGGCTTGCGGCAGCCTACCTGTCTTCACGGGATCCAATTGCAGTGAGGTCGAACTACTACCAGAGTAGTCGTGTGAATGGCATCAACGATCAGATTGTACGCGGAGCGAGTATGCTGCGTCAACTCATCCAGTTCTATGAACTGTTGAACAATGAGAGTTTCCCCGCAACCCTCATGCAAGGTCTCGTACCCCTCTGCATGAACGGCTTCAAATATGTCTTCAACTCTGTGAGACTGCCCGGGGAATACATGGACACCCCCGCTGTCTTCCCAGGCCACGCCTACATTGTTGTCATCAGGAAGGGTCACTACTTCAAGCTGGACATCTATGCGACTTCGGCCACTGGTCAGAGGTCCCTGCTGACCGCCACTGAACTGAAGCAGCAGCTACAAAATATCTGTGACCAGGCAGAAGAATTGGAGGATGAACTGAGTGTGGCCGTTCTCACGTCACAAAACAGGGCTATCTGGGCGAAGCAAAGAGAGGTGTTGGCAGAGAAGAACAAGCTGACTTTGAAGACAGTTGAGGCCTGCGCGTTTGTCTACTCTCTTGATTCAGAAACTCCTACGGACTGTGATGAATGTTGCCGATTTGCCATGACCGGAAACGGCAGCAACCGATGGTTTGACAAATGCTTCACGTCCATAGTTTACCCAGGAGGCACTGCGGCTGTTAACGTTGAGCATTCCGTCATAGATGCTACGGTGTTTGGCTCTGTTGCTGAGTACTGTGTCGGAGGGGAACGCTACGAAAATGGTGATATCATCCCTGACCCTCCACACGCCCCTCGGACGGTGAATCCCCCAGTCAGACTCGAATGGGACCTGTCGGACGTCAAAGAAATGATCTCAGTGGCTATGCAAGATTTCCATCAACTGGCTGACTCGATTGACCTGACAGTCCTCCACGCACCCTACAGCAAAGGCCTGATGAAGAAATTCCGCATCAGTCCAGATGGCTACATCCAGATGGCCATACAGCTGGCATATTATCGCCTGCACGGAGAGTTTGTCAAGACATATGAGCCATCAACTCACAGGTTGTTTGCTCTGGGACGCACCGAGACAATCCACCCAATCTCTGACGACTCAAAGGCGTGGGTGCAAGCGATGCAGCCAGACAGCACTGTAGATGGCGCCACCAGAGTGCGCCTGTTGAAGAGTGCCATAGCCCACCAGATGACCTTCCGGTTGAAGTCTACCCAAGGTCACGGCTGCGACCGCCACCTGCTTGGACTCTACTGTGCCTCTCGGGAACTGGGCATGGATATCCCTAAGATCTTCATGGACAAGGCGTGGAGACTTCCATTCAAGCTGTCATCTTCCCAAACTCCCACTGCCGTGTTGAGCTTCAAGCCCGACATGGACCAGAAATGGTGGGGCGGTGGCTTCGCTCCCGTGTGTGATGAAGGCTATGGCATCTCCTATGTGTTTGTCGGCGACGAAAATCTTAACATCAACATCACCAGTTGGATGGGTTGCGGAGAGACAAACTCGAGGAGGTTCTCCAAGAGCTTGAATGATGCCATGGAGGATATGAAGACTCTACTCTCTGCAAAGTAGATGCTCTGTTACGTGAACTTGAAGTCTGGCAGTTTCTAAGCATGGCTTATTTCAGTGACGATAAAACCTTGCGTAACCGTACAAACCCCTGCCTACGCTTGATCTCTGGTGGATGTCACTTGCGTTGACCGATAAATTAATTAATGTATGTGTGCACAAAAAATATTACAAAACAATGTTTGTTTTGATCAATTAAAAAATCGGAACTGGGTACACGTGGAATAATTATTGTCACTATTTCCCTGAAATTAACAACGTTAGTAATCCTGACTGTTGTTTGAAACATTTAATGTAGCAGATCTCTAATGATTGTGTCGTTTATTGGCAGGTTAGATATAACTTACACTTGCATGAAAAATGTAATAAGACTCCTTTACACTTTTATTGATTGTTTTATAATTGGTTCTACGTATACGTTGAATAATTTTTATTCGATGAAAGTGTGATTGTTTTACTTTCAAAACCACTGCTCAAATGTTGAACAGTTTGACAACATTTTAAGTATATTAATGCTTTGTTAACATGATGTTGTTTATTTTCAACATTGAATGTCGTTTCTCTTGTGTTAATGACATTGTTTGTGTTTGGTAAACACCGGCTTTATGAAAATACGTATCATCTGACGGCTACCACACGTTTCGCTACAGTTGACCATGCTATGCTACTGAAAAATCACCTATTGTATAAACCTAAAACATGTCAGCTTTAGTTTCATGTACAACTAAATTACTTCATATATTTCAGATGTTTGTATCTTTTTGAATTCTTGGCATTTATGAGGTTCTTTAAGGTTGATTTTTCACTGACTATGCATGGATTTTAGCTGTGTTTTCTGCAGTAATGTTTGAGTGATTAATTGTATTTACACCGGTGCCATAACTATCTGATTACAACACCAATAGTGTCGCTCAGGAACGTTATTGTAAATTATTTTACTAGTATATTGTTCATTCTTATATATATATCTCAGACATGTTTTAGTGAGATGTGCTATTTAAAATGCATCTATGTTCTAGAAACATTAAACAGTTTTTTCGAGTCATCCAGCTTAGTTTGTGCCAACGTGATTGGTTATTTCGTAGCTACAGTTCAAAAGTAGCTTAGACACTGATTCATGTGACATCTGCTGGTCACTGGTGTAGTGGGTGCTATGACTGATGCGTTGATAAACCGTCATGATGCACCATTATCCTGCCAATGCCATCTGGTGTACAAACATTGCATTAACAGATTTATACATCATTATTTTAGACTACGCCATCGTCAGACTTTCTTGTACATGATTGACTGCAATAAAATTGATGCTGCCTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04280	Tim44	Tim44-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007379	Domain	Tim44-like domain	Interproscan
IPR017303	Family	Mitochondrial import inner membrane translocase subunit Tim44	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR039544	Family	Tim44-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10721	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0030150	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0051087	Molecular Function	protein-folding chaperone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02535.1 global RNA-seq network