Gene detail

Detailed information of RPACG02518.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02518.1	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	tig00000596	2037915	2051161	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG02518.1

AGAACTCCTCAGAGAATCAATGCGTACGAAATATCAGGAGTTGACAGTCCTTGCTAGTCAATCAACTGCTTTTGATTCAGAACGGCCGGAAAACGTAAACAATTTATTTGTGGACGTAAATCTGACGAAGTATGCCCAGAGTTTCGAGGAGAAGTCAAGTTATTTTGATATGATGAAAAAGGAGAAACGTGTGCAAGCAAATACAACTATGCCACTTGAGCATGTCTTCAGCGATGTCCACGACGAAGGACAGAAGACTAAATCGGTCAGAAAGGTTTTACTCCAGGGAAAACCAGGAGCGGGCAAGAGTACTCTTATGAAATATGCTGCTAATCGATGGGCGAAAGGCAATCTTTGGTGTGACACCAAATACATGTTTCTAGTATCGCTGAAAGAGCTCGACCTCCTGGCAAATGAGAGTTGGTCACTCAGCAAGTTGCTGTTAGATGGGCTCGTCTCAATAGGACATCAATCCGCATGCATTGATGTTATTACACGACACCCCAAAGACGTGTTGGTCATTTTTGATGGATATGATGAGAAGAATTGGTCTAACGAACAAGAATGTAGCAAGAACGAACTGGACTTGTCAAAACTGATATCTAGAATAATCAGCAACAATGAATTGCCTGGGGCCAAGGTTTTGGTAAGTTCGCGACCAACCAAGCATCTGCCTGTGAAGACATTCCACCAATGTCTGGAACTTTGTGGTTTCACCAGAGAAAACGTACATGAGTACGTTCACAAGACGTACGGAAAGGAAGAGAAGAAATTCATTATGAGGAACATCGATGATAATCCAAACATGGCTGATTTGTGTCAGTTGCCACTCCAGTGTGCATTTGTGTGCGCATGGTTAGCTGACATGTATGCGAATGCTAAGAGATCAGTGAACGTTGCTATAAACACGACAACAGACCTGTATGTAAAAGTGACTTGGCAAATGGCGAGAAAGTCTCATCCAGATTTGAAGTACAACCAGGAAACGACCGATTTAGATGATTTGTATGACACCATAGGAACACCACTCGTTAAACATGCAGATCTAGCTAGACATGGCATAATGTCATCGCCAGCCAAATTTATTTTCTATAAAGAAGATCTTGACAAGTTTAACCTTAGTGGTGATGACAAAAACTGCGGTTTTTTGGTGGAATCACGGACACCGGATCCTCGGCACAAAGGAGCAACTCGGCCATGCTGGACCTTTATACACACTACGCTTCAGGACTACTTTGGCGCAATTGGCATGCTGGGAGCAGACGACAGTGTGTGGAAGCTTCTTCAGAAAACAAAAGACGACGAGAAACTAAAGACGATGGTGAAGTTTCTTGCTGGGCTGCTAGGAGATAAAGGTCACAGGTATTATGTTGAGTGTCTAGTATCAAATGGTGCAACCCTTGACACAGACTGGTTGAAATCAAAGTTGACAGACGTGATGACATTGACCCAGAAGTTAAATGATGATTCAATGGTAATCGCTACTGTGTTTGAAACACAAACTTCCGACATGGTACACATCGCCCCCACTGACATTTTTGCAACCAACATGTCCATGATGGATACACGTGCGTTGCTGTGGCTTCTGGAAGATAACAACTTCCACATCACCAGTTTGAAGTAAGTCAACAATTTGACATAAGTTCATATATAATTAGTTTCACATGCGAGTAGACGTGCACTAAGCTTTTAGGAGGAAGCAACATCATCGCTGTGGGCCAGAACATTCATAAACAATTTCACAAATATCAATAGAAGTTTCAAGTTAGCTAGTTCAACATCACAATTTGTTTAGATACAATATTGCAAGGTTTTCATTGTCTCTCACCGTTTTTGTGATGGCATTACATGACATTTACGTGGCTAATGCATGTACATTTTAGAAAGTGTAGATACTATATATAATATTACTTCTTAACTACATTACATCAGGTTGGCAAGTTGTCAGCCAGTGTTCATGCAGCAGCTGATCGATGCACTGAGAGGAAAGGACCAACTCCACACCCTGTTCTTTCATTCAATTGATCTGAGTGGCCCCATGACAGGAACTACTCTGGGTGAAGCCATTCGAACTTTGTCAAATTTGAAGGAGCTTGTATTGTTTCAATGCCACATTGGAGCTGCTGAAATGCGACATGTGACAAGTGGTCTTCTGAACTGTCGTCACATTGAGTTGCTTATTCTTTCCAATAACCACCTCAGTGATCAAGAAGCCGTCAAAACCTTCTGCACAGGGATCAGAGAAATGACCTGTTTGAAAATATTAGGCCTTGCAATACCCATGATGCACGAGGAGATTGGGTTTCAACATGGTGGAGAGGTCGACGTATTCGTCAGCCCATATTTTAGCCCGGAGCCTTTCTGGGATTCGAGCATCAGAGGAAGGGCCGTTGAAGAGCATGACTTGATCAGACTACAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00650	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR001251	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036273	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR036865	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02518.1 global RNA-seq network