Gene detail

Detailed information of RPACG02510.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02510.1	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	tig00000596	1798849	1807741	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG02510.1

GTTTGGCACGCGTGCGCGTGCAGACGTAAACGTAGGTGATCGCTAATCGGAAGGTAGTCTCGATGCTAATCGGACAGGGAATGCTGTGGTGTAGGTGCGTCATCGACGATTACCTTGATTACCTTCCGCCTTCAAGAATTGATTACATGAATACGACGACCTACAGCGACGTACACTTGATATGTGAGCCATAACGTGCGAAGTTGATGCGATGTCGCAGCACTCGTTGAAACGAACGACCGCCAGCGTCCAGAGTCAGACAGAGGAAGTCGTTGATCTCCGTCAAAATGTAGGCAGTCAGAGCAATGTGCCGACAGATTCGGAAGTCCGCGATGTGCACCCCCACGGAGTTTTCGGCCGCCAGTTCTTCTGGATATTGGCGATCACAACAGCTGTACTGGCGGCAGGACTATCGACGGGTGGAATCGATTGTTTTGTCGCAAGGTTACGGGATGCCTTCGACTTCGGTATTGGGTTGTCGACCCATTACCGAATTCCATCCCAGTTGGTGGAAGACGTTGGGATAGATGGTGTGATTCTGTTTAAACAACACGACATCAATGATGACGGACTTTTGTCGCTGAGGGAGTTCGAACCTATTGCTCACCAGCTACTGGACATTAAGACGCATAAGCAAACAGAGAATCAAAACATGACAATAGAACAGCTTGACGAAGTTATCACCATTGAGACTTTCTTCAAACCCATACTGAAGAGTTCCCTTACTAAGGACATTACTTCAGATTACACAGATATTCCTGGTACCCTTGATCCGATGGCAGGCCTCAAGAAATGGAAGTCTCCAGCTGTGAAATGGAAGAACTTTGCCGCAGGACATTTCAGACAGTTTCTCCCACCACAAGATGAAGAGATCTTCCCGGGGAAGTGCTATTACATTGTCGAGCCCATCGTGCAAAGGAAGGGACCGTCCTTGTCCAGCAACCGATACGTTCCTCCACGCCTTGTCCAGGACTCCTGGGTCATGGTGCAATCCCTCCTCGCCATGTTCCATCCCGTTCCATTTGTTTACGGCCGATTTGCACCGCAGGGAAGCGTAGCATGCATTCGGGCATACAACAATGAATATGTAGACGTCGTGTTCAGAATTCACGCAGAGTTCCAGTTGAATGAACCACCATTTTACCCATTCTGGTTCACTCCAGGACAGTTCACGGGTCACGTGATCCTCAGCAGGAATTCTGGGAGACTCCTGAACTTCACAATGTATGTGCCAAACGACAAGAGGCTTAATGTTGACATGGAGTGGTTGACGGACTCGCACGAGAACATGGAAGTCGACATCGGCTACTTGCCTCAGATGGAGCTGAGGGCGACCAGATCGTCGATTCCGGCAATACTGGACAAAGCCGACATCCGTAATGTACACATCAATGCAAGCTCCGGCAAGCCAGACGATACACTGTCGATGATCATGTGGACGGAGGAGATCTCGGAAAAAAAGACGGCGGGAAGGCTCGAAGTGATGCTGTTTCCTTTCAAAAAGGTGCCTTACTACAATTTAACAGAGGCATTCACGAGGGCACGGGCTGAGAAGAAACTCGTGCATTCGATCGTGTTGTGGGGGGCCCTGGATGACCAAAGCTGCTGAGGTTCAGCGCGGACACTCCGGGAGAATGCCCTCGAGAGTCCGCGCATCATCCGTCTGCTTTCAGACAACTACATCAGCAGCTGGTCACTGGTTGTTGACCTCAAGGCCTTGCAAAGGAATGAGGACCGACCAGAGTTTGCTGCTATTGCAAGTGAGCAGCTGTCCATCTATCGCTTCCCTGTCATGGTGCTGATGTCACTGCCCAATGGGACCCTGGTCCACAGCTGCAATGCCAATGACCTGCTCGACAAGGAGCAAGTGATGGCCACGAGTAGACTTATATATGAAGATCCATCAGAAGTTGTATATTACAACCTGCTGAATGAGGGACTCACAAAAGGTCAACCATACTTATAGCAATGTGAAGTGTATCCAATTGTTTATCTTGACCACTTGTTCTCGAGTCAGCCCTCTTGACCACTTAGTCTTTGTTTGTGAGCACAGTCAAAACCACCCAATGGTATTTGGACAGAATTATGTATGCATTTATTTTATACCGATATGTTGAACAGGCATCTTAGTAGATTGCTATGTTTTCATGATATTAAAATACAGGGTATATATATATATATATATATTATATAGCTTCATATAATGTTTACAGTTATTGATACTTTTCTTCACATGTACTGTTATGTGAAAGGTATTATAGAGTATATTTATATTGAGTGAAACGTCAAGGTGTTGTTAAGAAAGGTGACAAACAAGTTTGCATTGTTCATTTATACATTATATACATATATTTTCTTAGCGTAGTTATACTTACAATACCTGTGTCATTGAATTCATCTAGTAAATGTGTTACAATGTCAAGTTTCAGCAATGGGCACATGTTCATTTGGTATCTAAAAGGTGTGTGAAGTATTCAATAAAATATCATAAAAAATTCACTAATATTTAAGCAAGAGTATCCTGCTTTCCAACACATTTACAGAAATATAAATTTAATTGTTACATCTGCATGGAAAACAAAGTGTTACATTTACATATGTCAATTGTTAATGAATGTTAAACATTGAGAGACTTATTATTTTAATTAATTTTACACTGGTGTGGCAATTACGCTTTTTGTAAACATGTTTCAGACATACCTGACGATTTGAACCAAAGTTAGTTGGAGCACGTATATTTTATTTGTTACAAAGTGTTTGTATTGACTGGTAACGCTAGATAGATGCACTGTTATTGTTATCATAAAATGCCATATTATAAAGCATCTGTACTAAAATGCGATATTATAAAGCATCTGTACTGAATTGGTGTGTACCGTATCGAACTATCTGTTAGTCATTTTATCTGCGTTAACATCTGTATTAATGAAGATGGGTTTGTAAAGTGTACACGATATACATGAACCTGTTGGATGACCAACAGACAATAACACAGGTCAGATGACTACTGTGTTCATATAGGACACATCTGTTTGTGATCGTAGATCGAGTGTGATTGTGACGATGGGCAAATGAGGCATTGCTTTAGTCAAAACTGCAGTTGTGGCAAACATTTCAATTGAATACATGTTGCAGTATTTTTGTGATGATACAATGAGTGTCACAATATACATCTATATATATATATATATATATATATATATATATATATATATATACACATACTAATATATATATACATATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00566	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF00581	Rhodanese	Rhodanese-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000195	Domain	Rab-GAP-TBC domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001763	Domain	Rhodanese-like domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR035969	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR036873	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22957	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02510.1 global RNA-seq network