Gene detail

Detailed information of RPACG02323.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02323.1	IGGFC_BINDING DOMAIN-CONTAINING PROTEIN	tig00000590	1828743	1830277	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG02323.1

MWLLQLSALLSVMAPIAGLSDISCDTMQPNHRGTTPRTNKAPFTLVVSTSTYLPNSHVTVTLHGESASFEGFLLQARVIGDVTNNPVGTFSSPPSHTKLKSCQAEDDTLLHSDDTSQQEFSVMWNAPNKRVGDIEFIVTVVQSFNTYWMRITSAILVPDMTSGSLNTFGTDFILTFIGIKSEEPGPPELIFTTLKSDVDVTVEVPSLSYKKSLKVSSSSAGFRSLSLDVRMLGTGKSNNGVLITASAEISVYGINKGLYSTDGFLALPMDTLGKEYYAISYTPEGDYAELGIVATKNNTMVHLVLPVHGNLRIEYKGKTYLQGEIIVVALDRLESFQLQTSSDLTGMHIFSNELIAAYSGHRAMVVGIPGTQPDHSVVQLLPVSRWGKKFAVTSFPGRSNGDIIRLVTSVDDTTLTIDGTETVLRYSGSHHDITLPSGSSIYFTTDKPVMVIQFGQGQDQNNPNNGDITTALVPSTDQYQSEYKFASPDASEGSFVNNAMVMVLKTEQDKVFIDAEAITNLGEIWQPILRSSPPMVAKRIQVTSGQHRMYMKDSMEKFGVILFGYTTKESYSFPGAMGMEILNPAGCVPLPAQTDDGIDNDCDGSVDEEICDNIDNDGDGIKDEDCHSTSGRCTLNYQGKEFVLMFTENIAKTEDLTLFISSPSSNEVIVTIETPEFGTKLTKTVILYPRRTEVVTLPKELQGSGTALEKKGIHVRSTEDIVVYGVNSQQGSCGAFNVMPVIALGYNYFVMSWWPDTGAKNYGQIGIVAAEDVRVRVVIPHSKGIVFTYNGVEYNENKPMEFQLKKFETMQIQNVDFADISGTKIEADHKVAVFSGVLSTNIGSGNVDHVVEQMIPIHAAGKTFGLVPFPNQVTGYRIRVMSVLPDTSVNIGGNKRSLGLAGQYADHSLRSDKPVGISADKPVIVAQFSESQSSGTPGGPSMVLVPPTQQYRNAYTFMVPMPSTMYNSSYLLLIIEAGQENQIIMDGNHVRGQRLDITNTSPHLVGVTASLSSGRHHIYHQFSEVKFGLYLYGTARGTCAFSFVAGMCLEDIRQVSTTPASTSTTTASTTTTTTTTTSTTTTTTPTATTTSTPITSTPSRPTTTTTVTTTTVPTTTTVTRPVTTTAPPAISTTNTVITVPSTKTTTPSGTQGECKVDYLGRKFVLMFIENAETTENMQLFISSTGDRPASVEIDATAHSSKFHKTVNVPSGQTQTVNIPKELQASGVAVEHKGIYVSASEDIVVLGFTKHGGSCGGFKVMPLDALGFNYYAMAWWPDSAVKNFGEIGIVATEDQTRVQITILRTKGVTFMYNGNSYNEDTPIEITLNQYDTFQLQNHKFSDITGTKIEADKRVAVFSGMLQTNVGGGDVDLIVEQMPTVHSWGKSFGVVPFPDQTSGYFVKIVGALTDTIVHINGKRYDIANPGEFIEHSCSQYIGITANKPIMVAQILRSQSEQQSGAPSMVMVPPTEQYMNHYVFSVPGGTDYHAYILLVARHGETDRLLIDGVAVSGTWQNVPDSTPALVGIQLPLTAGLHIALLENSGVGFGAVVYGYGNAGCAFTYHAGMCLTDITNVSVDGPPSMTSTIMTSPPLSKPTTKSTTPQTTLAPTTKTMPTTISTQTVPPTTVTTTTRTTTVTTPHMTTKVVAPEIQGECALDYGGREFVLMFPETVDGSDLKLFIISQGNHPAAVTISSPLLNQTLYQRFTIRPAEPKTVLVPSALQASGIGGSRKGIRISATDDIEVLAFSGATGSCGAFNVIPVDALGYNYHAMTWWPEAYENNVGQIGVVATEENTRVQFNILPSKGVSFTYNGDTYDETTSSLEVMLNRYETFQLQTFDASDITGTKIQADKKIAVFSGMKQTNVGEGNVDHVVEQMTPIHAWGQMFGVFPYPHSKSGYHIKVVSNTDDTVVYVDGIQHTISKAGGFFDMRLRSLSPIAVNASKPIMVALFSDSVSSGDIGAPSMVLISPVEQFKKNKYTYSLPRGTSIQTFVQLIAVKDTWDQPNFISIPHSYPQLAGFAEDLVSGSAYSQKDAKFGGYVQGNGARGCSVAYQLGACLTDIRELTSTTVLTTIATIKSTPETQTTTKSTLSTTPGVDKTKSTTMSRTQTDPSTTTMSTTTTATTPPMTTSEKVTAPEIQGECVLDYGGREFVLMFPETVDGSDLKLFIISQGNHPAAVTISSPLLNQTLYQRFTIRPAEPKTVLVPSTLQASGIGGSRKGIRISATDDIEVLAFSGATGSCGAFNVIPVDALGYNYYAMTWWPEAYENNVGQIGVVATEDNTRIQFNILPSKGVSFTYNGDTYDETTSSLEVMLNRYETFQLQTFDASDITGTKIQADKKIAVFSGMKQTNVGEGNVDHVVEQMTPIHAWGQMFGVFPYPHSKSGYHIKVVSNTDDTVVYVDGIQHTISKAGGFFDMRLRSLSPIAVNASKPIMVALFSDSVSSGDIGAPSMVLISPVEQFKKNKYTYSLPRGTSIQTFVQLIAVKDTWDQPNFISIPHSYPQLVGIADNLVSGSALSQKDAKFGGYVQGNGARGCSVAYQLGACLTDIRESSLTTTTTAQTAPTVITTPGIPTTSKSTSATTPGISTTSKSTSATTPGISTTSKSTSATTPGISTTLNSTSATTPGIQTTPKSTPTISTTISTTTVQKTAGPTTPGIPAIKPTTGGPVSTPACPEGQITADPKSCKNFYVCKDEILKRFTCPLDYHFSISDFTCLKPRDAGCKPTPGLTSGGKEYVIQFMANPSNDKVVELLINTASLTPVNVRVTTPPSSTPAVNRTVTVRKGETTVVTLPADIRSASTGRGIKAILLRADGDIIVTTINHGSCGSKLALPTQGLGTEYYAMTWAPAGGVAQVTALAITDDTEVTIVIGGVVDVSVSYESRSYTYGEVITIKLAMYESVVLESGQDLSGTKIMSSKPIVVSAGNTDTTIGSGTLSDQLVSQMTPVNTWGRTFALTPLPGSLTGYFVKILASTTGTVVHIHGHPDEILGAGKFVVIDIASNEPTWISSTAPILVVQYAKSETSADDLGAPASLLVPPISQFLSDYFFSVPQVSATTKRSVLIVSETSTRDGLLLQGAPLSTVVQWRDIAGSTPAMSVAIVPVSELAYVLRHRSDVSFGAYVYGADSGNCAYAFPAGMNLVSNPEPVLPTSTAKSTEGPVAETSGPGIISTVKPTTSEPRVDSTIKPTTSGPRVDSTITPTTSGPRVDSTIKPTTSGPRVDSTIKPTTSGPRVVSTTKSTTSGPRVVSTIKATTPGPRVVSTPKATTPLSVVSTTQATTFRPGVVSTIRTSTSGVFSTRAVTRKVNDPTPTREFMCPDGSAAYYEDPYSCSRFYQCADGVSHSMACPSGLHFSAMVANCLPPNEAGCEPSTEQADNLGRTFYLLFLATEPANTQDVQVLLTTLTSQLVDVNITAPQFFRSVTVKKGQVKTVSLPASLRSSQSGRVNKTVRVMANGEVSVSALNRGSCGNFLVLPLLMLGDTYYVMTWKPASGSALVSILAVEEDTAVRVIVGGADLATIEYEGTVYKKGETLQVTLKQFESLVMQSRFDLTGTHITGSKPLAVYAGNTETTIGSGSLPDQLVSQFTPVNTWGYRFALAPFPGSTSGYYIKYLTQDVDTIVTVTTSSGPQSHKLNSGEYFVVDITSSELVWIESTNQILVVQYAKSQTDPTDLSAPAALLVPPVEQYMSDYLFTVPAATSIYVMIVIEKMQLTGLLLDGLPVNASAGWDDIPNSEPQMASRYVSILAGAHRLRHRITNVTFGAYVYGFTPEDCAYANPAGMTLHTINKTVHTTMSTTSYASPSANTSWISPNPTAGPDSTQPRTAGPPTVPSSTDRQSSPKPTDRGTFATSTKRVQTNRLTTIRYTAGPTTKQPQTNRPTSPASKLTPSTEGPQANRPSSSRPTVRGPIASSTERAQTKRLATFRRTAAPTTKQPRTNKPRSSTRTGGRTIKRRLTTGPQTTKGPSRTTIYYGTVRPTISDRLTTVEPTRQTATGRPTRRTTTTETPSTTIPISCPCTKLTVKSTKLQPSFAGQYSRLSNPFNGRPAYKHNSRSHFLYLVNEQTKFWLFGTELGKNRGLILAHSDAEEPSTIKTTWRSYDSSDMTWKDDDTVSLQCDCQAATCEKLTIGGHMFYNSIPGEFTLLGNDFNERPSYKNNARGLYFYYYADSSDQFWVVGTKLGAKVGLVFNYDSATNPRLISATWVSLQEGHWVADPDVQLHCV

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF02014	Reeler	Reeler domain	Family	Interproscan
PF17517	IgGFc_binding	IgGFc binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002557	Domain	Chitin binding domain	Interproscan
IPR002861	Domain	Reeler domain	Interproscan
IPR035234	Domain	IgGFc-binding protein, N-terminal	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR042307	Homologous_superfamily	Reeler domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46534	IGGFC_BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02323.1 global RNA-seq network