Gene detail

Detailed information of RPACG02121.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02121.1	BARDET-BIEDL SYNDROME PROTEIN 5	tig00000586	1802255	1824240	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG02121.1

ATGGACTTGGGAGAAGGGTTCCAACCAGTAACTCATGACCGAGTGAAAGCTGCCAAGAAACCAACAGAGTTGCCATTTTATCAGACTCCTGAGCATGTAGTCACTAGTTCAAAAATTATCACAGAAGCAAAGAGCTCATTAAAACGCTCTCAACTACGGAGTATTCCAACACGGAGGCCAGAGACACCACAAGAAAGTCAGCGTAAACTTTTCCCTTGTCACCAACGTGATACACAGGAAAGACCACCCAGTGCATTCAGCCTTGGTGTACAGCACTTTGAGAGTGATTCAAGACCAGTATCGGGGACAAAACTGGTTCCTCTTGACCTTGCTGTGAAATCTAAAAGTGTGAAGGGGGATGGCCAGTCCGCTCGTGCACCGAAACCACCAACTAATCCGAACCGGACTGTCAGACGCAGCCTGTCAAGATCTCGCCTCCAGAAGCCGTCCAGCCCAACCTTTGAGGCCCAGTCAAGACATGGTCGAACAGCGTCCTTACACGATGTGTCCGCGGAGGAGGCCGTGGCAGTGACACTGGGGAAGAACGTCGACCGGGAAAGGCGGGTTCAGAGTGGGCCGAAGGAGAGAACCAAGCATCTGGTGGAGGAGCGGGGAGAGGGAGACGGCAGTGAGATGACGCCAAGAGTCTGCAGCAGAAGTTCCTCGGAGAGAGTGGCAGGGAATCAAGGTGGAGACAGCTATGACACAAGTCTTCCTGTAGACAGTGGACGTCTTCCTGTCTCAGTCACAGGCAAAGGTGGTGTGCGCGAGAGACGAGACGCAGAGAAGGAAATGGATTACTACAATCTACACATCGTCCCTGTCCTTGAACAGATCTCCTCTCTCACCTCAGCCAAGGACTATGACAAGCTGGCAGTGCTGACGCAGCAGCTGTATGATGTGTTGGCCAAGGGCCAGTTACTTGGCAGAGTGTGTCACCAACGCTCCACAATACTCAAGACTCTATTCAAGTTACTCGACCTCAATTCACCGAGCACACTTCTCAGACTCGCTAGAGTCATTCTAGCACTGAAAGTGAGTGGAAACAATTTGATCAACATTTGCAAGTTGGTATTTAAAGTGAGCCGAGACGAAAAGAATGATATCTACTTCTTAGACGATAATATACTAGACCTACTGATTGAGACAGCTGGTAATGTTGACCACTTGAGTACGGCCACTGAAAGCCTCGTCTACTGCGTCGGGGCCCTCAAGTTCCTGTCAGCAAGTTCACTTGTTGTCAGACATCTTGTGAAGCGTCGTGCAGTGCAAGTGCTCGCAGGGCTATTGGCCGGGATTAATGCCAAGGTTTCAGAGACCCATGAAACCAAAGACAGACTAGGACACATTTTAATACAATTGACGGCCATGTTACGCAATCTTGCTGACGTGACAACTACACGCCAGGAAATGTTGTCAAATGGCGTCATTGAACAGCTGTGTCAACTCCTCGACAACTACCAAGTTGACGCCGATCTGATGCTAAATGTCACCAGGATATTCAGCAAACTGACGTTGCATACGGACTGTTGTGTGGTACTGTCCAGACAGGCTTCTAACTTCTCATTGTTTATCAGCCTACTGCAACGCCACCCAGCCAGAGAGGATTTGGTGGTGCGAGTGTCATTTATACTTGGCAACCTCACAGCGAAAAATGACTTGTCACGAAAAATGCTATTTGAACAACCAAACGCCTTAGAAACCTTGCTTTCGGTGTTGAGATCTTACTTTGAAATGGATTTGAAGCAGATGAGTTCGGAGAAGAAGTCGATTGTGAATCGCCAAGAGGACGTACTAGTGAAGGTCATCAGGGTCATTGCAAACATTTCAATGAACCCCGAAGTTGGTCCGTCCATCGCTGCTAGTGAACCCTGCATTCTGCTTCTGATTGATGTCTTGGAGCACAAGTCTGTTGAGAGCAGCGAGGAAGTGATACTTAACACGATGACTACAATCAACAACCTATCCTTCTATATTTGCCAGTCAAGTGCTATTATTGAGTACCAACTGCAGTTAGCTCATGCTCTGCTGAAGTTTCTTGAAGCGAAAAACATGTCAGGTCTGGCAGAAGCGACAAGAGTGTTTGGCAACTTGTCCAGAGAAGTGACAGTCCGCAACTTCTTAGCCAAGCAGAAAGTTGATGAGGCAATGGTGGCCATGCTGGATTCAGATAAAGTGGAGGTTGTGTTCACTGCGTGTGGTGTCCTCATCAACCTCATGGCTGATGAGGACAAAAGACCCACCTTAAAGAAGATGGATGGCATCAGAAAACTCACAGATGTGTTGCGGGACTGGGGCCCACAGGACTGGCAGTTAGCAAGCATGGTATGTCAGACGTTGTGGAACTTCAGTGGCAAGATCACCAGCACAAATGCCTGCTTTGGAGAGAGAGAGGCACAAGACCTGTCTGAACTGTTGCTTGAGTATCTTGATGCAGAGACCCTGGCGAATGAAGATGGAGATTCGGCTATGAAACAATACCTGCACGAAGTCTGGCAGTCTGATTTTGTCCCCGTGGCAACTCAGTTACTCAACAGAATCGAGTCGCACCAGTCAAACTTTGAAATACTCGAGAAGCCGTCTTAA

Transcript

RPACG02121.1

CACGCGCAAACCCGTTGCTAAAGTGAAGCGAAGCTTTCACAGAAAAACGGTGTAGGCAGGCCATTGGTAATCAGTAATCAAGACTGTAAACAGCAAGGAATCGTCGAAATTGAATATCTGATATCAGCTATCCTTTTAAACGTAGACAGAAAGATGAAGTAATACGCTCATACTAACAAGACGTGGAATCTAAGCTGGGAGAATGGACTTGGGAGAAGGGTTCCAACCAGTAACTCATGACCGAGTGAAAGCTGCCAAGAAACCAACAGAGTTGCCATTTTATCAGACTCCTGAGCATGTAGTCACTAGTTCAAAAATTATCACAGAAGCAAAGAGCTCATTAAAACGCTCTCAACTACGGAGTATTCCAACACGGAGGCCAGAGACACCACAAGAAAGTCAGCGTAAACTTTTCCCTTGTCACCAACGTGATACACAGGAAAGACCACCCAGTGCATTCAGCCTTGGTGTACAGCACTTTGAGAGTGATTCAAGACCAGTATCGGGGACAAAACTGGTTCCTCTTGACCTTGCTGTGAAATCTAAAAGTGTGAAGGGGGATGGCCAGTCCGCTCGTGCACCGAAACCACCAACTAATCCGAACCGGACTGTCAGACGCAGCCTGTCAAGATCTCGCCTCCAGAAGCCGTCCAGCCCAACCTTTGAGGCCCAGTCAAGACATGGTCGAACAGCGTCCTTACACGATGTGTCCGCGGAGGAGGCCGTGGCAGTGACACTGGGGAAGAACGTCGACCGGGAAAGGCGGGTTCAGAGTGGGCCGAAGGAGAGAACCAAGCATCTGGTGGAGGAGCGGGGAGAGGGAGACGGCAGTGAGATGACGCCAAGAGTCTGCAGCAGAAGTTCCTCGGAGAGAGTGGCAGGGAATCAAGGTGGAGACAGCTATGACACAAGTCTTCCTGTAGACAGTGGACGTCTTCCTGTCTCAGTCACAGGCAAAGGTGGTGTGCGCGAGAGACGAGACGCAGAGAAGGAAATGGATTACTACAATCTACACATCGTCCCTGTCCTTGAACAGATCTCCTCTCTCACCTCAGCCAAGGACTATGACAAGCTGGCAGTGCTGACGCAGCAGCTGTATGATGTGTTGGCCAAGGGCCAGTTACTTGGCAGAGTGTGTCACCAACGCTCCACAATACTCAAGACTCTATTCAAGTTACTCGACCTCAATTCACCGAGCACACTTCTCAGACTCGCTAGAGTCATTCTAGCACTGAAAGTGAGTGGAAACAATTTGATCAACATTTGCAAGTTGGTATTTAAAGTGAGCCGAGACGAAAAGAATGATATCTACTTCTTAGACGATAATATACTAGACCTACTGATTGAGACAGCTGGTAATGTTGACCACTTGAGTACGGCCACTGAAAGCCTCGTCTACTGCGTCGGGGCCCTCAAGTTCCTGTCAGCAAGTTCACTTGTTGTCAGACATCTTGTGAAGCGTCGTGCAGTGCAAGTGCTCGCAGGGCTATTGGCCGGGATTAATGCCAAGGTTTCAGAGACCCATGAAACCAAAGACAGACTAGGACACATTTTAATACAATTGACGGCCATGTTACGCAATCTTGCTGACGTGACAACTACACGCCAGGAAATGTTGTCAAATGGCGTCATTGAACAGCTGTGTCAACTCCTCGACAACTACCAAGTTGACGCCGATCTGATGCTAAATGTCACCAGGATATTCAGCAAACTGACGTTGCATACGGACTGTTGTGTGGTACTGTCCAGACAGGCTTCTAACTTCTCATTGTTTATCAGCCTACTGCAACGCCACCCAGCCAGAGAGGATTTGGTGGTGCGAGTGTCATTTATACTTGGCAACCTCACAGCGAAAAATGACTTGTCACGAAAAATGCTATTTGAACAACCAAACGCCTTAGAAACCTTGCTTTCGGTGTTGAGATCTTACTTTGAAATGGATTTGAAGCAGATGAGTTCGGAGAAGAAGTCGATTGTGAATCGCCAAGAGGACGTACTAGTGAAGGTCATCAGGGTCATTGCAAACATTTCAATGAACCCCGAAGTTGGTCCGTCCATCGCTGCTAGTGAACCCTGCATTCTGCTTCTGATTGATGTCTTGGAGCACAAGTCTGTTGAGAGCAGCGAGGAAGTGATACTTAACACGATGACTACAATCAACAACCTATCCTTCTATATTTGCCAGTCAAGTGCTATTATTGAGTACCAACTGCAGTTAGCTCATGCTCTGCTGAAGTTTCTTGAAGCGAAAAACATGTCAGGTCTGGCAGAAGCGACAAGAGTGTTTGGCAACTTGTCCAGAGAAGTGACAGTCCGCAACTTCTTAGCCAAGCAGAAAGTTGATGAGGCAATGGTGGCCATGCTGGATTCAGATAAAGTGGAGGTTGTGTTCACTGCGTGTGGTGTCCTCATCAACCTCATGGCTGATGAGGACAAAAGACCCACCTTAAAGAAGATGGATGGCATCAGAAAACTCACAGATGTGTTGCGGGACTGGGGCCCACAGGACTGGCAGTTAGCAAGCATGGTATGTCAGACGTTGTGGAACTTCAGTGGCAAGATCACCAGCACAAATGCCTGCTTTGGAGAGAGAGAGGCACAAGACCTGTCTGAACTGTTGCTTGAGTATCTTGATGCAGAGACCCTGGCGAATGAAGATGGAGATTCGGCTATGAAACAATACCTGCACGAAGTCTGGCAGTCTGATTTTGTCCCCGTGGCAACTCAGTTACTCAACAGAATCGAGTCGCACCAGTCAAACTTTGAAATACTCGAGAAGCCGTCTTAATGCGACTGAGGGAGGATATTGCCCATGCGTCGTTTTGTGTGGATGAACAGTGTCATATCGTAATGTAGTCATCGGTAACAAAGCGTTATTGTGTAAATAACAGGGGCAAGGTTGCCCTAACTCTTTCAGTATTGCATTTTCAGGACCTTGCACGATGGGAAAATATGTACAGTGTATGTGAATTTGTTATTTAAGTGTGCTTATTTGGGTAAAATTATGTAAGACTACCAAAATATGACACAACAGTTTTGCATTTGATGTGGTTAACTAATCAAGTGAATATTCCAATCACTTTTGTTGTAGCGCAGCTTCGATTGATTTATTACATGTATGACAATGTAAGCATGTATATACATAAAATATAAATACAGAGTACATTAAGTATAAATGTATATAGATGACAAGAAATTATAAACACCTTAGATGTACAGAGACACAACATTAATAATAAAGGAACAAAACTGAAAATGACAGTTGCATACGAAACATTTCAATATCTGCCAAAGTCGTCATGAACCTAACAACAAAACAGAATCAGTATTCCATTTCCAACCATTTTTGGCACTCATTTTGTTGCAGAAATGTCAGTTGGCTGATGTCAAGTGTGTTACATCTTGCTGTGAATAGTGTGTATGCTTTTGTTCACTACAACTGCCACAAAATACAAAACCTTGGTATGCCTTTTTTGCAAAATAGGAAACAGTTGTTTTGTAATAAATATCACAGATATTTGTGGTCGTCTGTTGCATTTCCTGGCCAGTCAAGGAAGTAATTACTGGCAGAACGTTTATTGAAGTGGTTGTGTGGGGAGTTGGGAACACAACACATCAAGTGTATTGCATATAAACCTTCTGAAATCCACATTATTGTCAATAAAGATTATGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07289	BBL5	Bardet-Biedl syndrome 5 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006606	Family	Bardet-Biedl syndrome 5 protein	Interproscan
IPR014003	Repeat	DM16 repeat	Interproscan
IPR030804	Family	Bardet-Biedl syndrome 5 protein/sex-determination protein fem-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21351	BARDET-BIEDL SYNDROME PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034464	Cellular Component	BBSome	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0046907	Biological Process	intracellular transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02121.1 global RNA-seq network