Gene detail

Detailed information of RPACG02049.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02049.1	GATOR COMPLEX PROTEIN WDR24	tig00000586	335116	360060	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG02049.1

ATGGATTTCAATTCTAGCAACGAAAATGAAGAGGAATGTGGCTGTGATAAAAGGGGCGTGTCAACAACACAGTCGCAGAAATTGTGCGGATATCTGAAGAAGTACAAAATTGGCGCGAGAGGCAAAACGTTCAAACGACGGTGGTTTGTGCTGGCGGAAAATACATGCACTCTGCTGTATTACAGAACTGCACAGGACATTATACCACTTGGCAAAATAGACATTGCTAGGGCAAGTTTTAGTTTTGATATGGGAAACATCAGTCGCCAAAGTCCATGGATTTTTGAGATAACAACACGTGGAAAGACTTATTGCCTTGAGGCGAATGACAAGAATACACTCAAGTACTGGCTGCAGGAGCTACAGCATAAGCGGAGTGAGTACAGCTGTCAGAGGATACAGTCAACACGGTACCTGGCCGGACCAGTTCAACAGCCAGTCAGTGGACTCGTGAGTTTGGACACTGTGACTTTGAAACATCGACTGTCTTCTGGGGACGCACCCACCATCACTGACCATGTGGACATCTCCATGGCAACTGTGGGTGAAGCAAGTAGACACAGCGACCATGGCAGCTTCCATGATCTGTCAATCACCAACTGGAAGACGGAGTTACGCAACATAATGGCCAACAGGGGGCAGAAGAAGAGCGATATAGACGACCTGGACGTGTTTGACTCTGCTGCACCTGTGCCCAACAAGAAACGACTGATGACGTTGAAGAATCTCGTGCAGCAGTGGAAGCCTGCCAGTTGCAATGTAGGTGGCAAAGGAGGCAGTCAGGGGCCATGTCAAAGATGCAAAGAATTGGAAGAGCAGCTCGCCTCTCAGAAGGAAGATTTGGCTGCAGTGGAGGAGGAACTGGCAGCCACGAGGGAGATCATGAAGATTCTACAGAAACACATCGATACAATAGAGAAACAAAATCTTACAAGGCAACACATCAACGATACAGAAGAAGATTTGTCAGCACAGCTAGATGAAAGAGACAGACAGATCGTACATCTGGAACATGCTCTTTCGTCTATGCATGAACAGAATCAACTCACTTCAGCACAAATCCGACCACTACAGACGGAGATTGCGAGTCTTCATGAGCAGGCCGCAATGTACATTGAGAGCATTCAGGCGAAGGACCAGATCATTGTCTCCCTCACCAATGGATTGCATCAACTAGAGCTTAGCCAGTCAGCGACCACGGATGGGTCCAGTGCAACGGAAGGTGCTAGTGTCCGGTTATCACAGAGATTTATTTCTGACACTGGTGAGCTGGATGAGCTGAAGGACATGTGCACAGCTTACCAGGAGCAGAACAGCTTCTTGAACAAGGAGATTCTGGAGCTGAACAAACTGAGAGAAAATGATGCAATTGGAGAGAACAACTTACTTACGCAGTACACGGAGACGGCAGCAAGGCTTTGTCAGTTGGAGAGCAAGTACCTTGTGTGTCTACGAGAACTGAAGCAGCCGCGCCGAGGAGGAGAGGAGGACAGTCTCTCACAGGAGATGGTGTCTCAGCTTCTGCAGGAAGCAATGGACACGGAGATGACACAAGCCACAGGGACTGGCATACTGCGAGACCACAGCCAACAACCACACAGTCGCACATATGATGAGTATGGCTTCTCTCTGCATTCAATCTACGACTTTGACCAGAATTTGGAGTCAGCTGCGGTAAACCTTCAGAGGGTCTCAGATAAACTCTCTAGCAAAGCTCAGGACCTGGGGGTCGACATGTCTAACCAGGTGAAGTGGGAGAACTACTTGGTGAGCATCGGAGAAAGAGAAATGCAGCGCAGCCGTGAACTGAAGCTTCTTATACGCACTGGCATCCCATTGCAGTACAAGGAACGTATCTGGAAAGGGTGTGTCAAGTTCCATGTGGGTAGCTGGACGGAGAAGCAGCAAGGTAACTACTACGAAGACTTGCTGCAGACTTGTAAAACAACACAGCTCCTCAACCCCGCACTCAAACAGATTGAACTTGATCTACTGCGGACATTGCCCCACAACAAGCATTATCAGACATTGAGCTCTGAGGGCATTGCTCGGCTGAGACGAGTCTTGTCTGCTTACTCCGTACACAATCCTCTTGTTGGGTACTGTCAGGGAATCAACCGTTTGGCAGCATTGGCTCTGCTCTTTCTGAATGAGGAGGATGCATTCTGGTGCCTGGTGGCAATCATTGAATGCATCCTGCCCCCAGATTACTTCTCTGTCACTCTGGCAGCTGCGCATACTGACCAGAATGTTCTCAAGTACCTAATCAAGGAGAAGCTGCCCAGTCTTCATGCCCACCTGCTCCAACACAAGGTCGACATTTCTCTCTTCACTTTCAACTGGTTTCTCACAATCTTTGTAGACAACGTTCCTGTTCAGTTGTACCTGCGCATCTGGGACGCATTTCTCTACGAAGGCAGCAAGGTGCTGTTTAGGTTTGCCCTTGCCTTCTTCAAGTACAATGAAGACAAGCTGCTGCAGTTGTCAGACAGCATGGCATTGTTGAACTTCCTCAGAACACTGCCAGAAAACATCACAAACATCAACAGAGTTTGTCAGATTGCATTCGATGAGCTCAACCCATTTCCTATGAGACTGATCAACTCAAAGAGAGAACTCTGCCTGACAGAAGTTAAGGCTGAGCTCCAGAAGCTTGACAAGCTGCGATCTGACATGTGCACTGAGAGCAGTGTCAGAGCTGAAGACAACTACATCAGTGACGATGATGACACGTGA

Transcript

RPACG02049.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037590	Family	GATOR2 complex protein WDR24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46200	GATOR COMPLEX PROTEIN WDR24	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005774	Cellular Component	vacuolar membrane	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016239	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0032008	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0061700	Cellular Component	GATOR2 complex	Interproscan
GO:1904263	Biological Process	positive regulation of TORC1 signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02049.1 global RNA-seq network