Gene detail

Detailed information of RPACG01928.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG01928.1	SERINE-THREONINE PROTEIN KINASE	tig00000571	1956681	1965899	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG01928.1

GAAAAATTTGCTTGACAACAATCAGCGGCTTTAACGGAGCAAATAAAACTAACCATATTTACATATATCCGTTGGCCCTAACTTATCACTGTCATCGTGTTCACGCTACAGTCAGATACGTCCTGTAAAGGTTTCGTGACGATGACAAAAAAGAGCTGTGCAGTTCTAAATGCCTTTACCTGGCTCTCGGTGGTATTTACCGTTGGATACGGTGACTGCTACTTAGAAATACAGATGGTATCATACGACAATCCAACCGGGTCGAACTGGGCCTACGACTACTGTGATGACAGAGTTTTAGGTGATTACTGGAGATGCGACACATTGTTCACGTTTTGTGTTGACGCCGCAAGGAATGTGGATACTGATGTGTGTTCCTACTTCAAAGCGAAGTCACGTGTGTTCATGAACCAAAACAACTTTGTGTTCGGCCAAGACATAAAATCTGTGTCGAACCCCATTAAGGTTCACTTCAATGCATGGCCGGGGTTCATCCGGTTCAAAATACTGACCACTGACAAGGACCTGATGTTTGATGACAAAATAGACAAGTTCAATGATCTTTTGGACATACCTGCTGCACGTAATATCAACGAATCGCACTGGTCTGAAACCCACGTCGGTGTTGGTCTCAGAGATAACGAGCCCAGCAGTGTGTCATACAGATATCGCGTCTACTGTGGACCCAACTTCTACAACACCGACTGTAAAACACATTGTATTCCAACGAATGGTCCGATAAAACACACGATGTGCGTCCCTGACACTGGCGCCGAAGTATGTCAGCCGGAATGGGAAGGTGCAGACTGCAACATCTTCTCCGACGACTGCATTGGCAACAATTGCTCGAACGGAGCGACCTGCGTCGACAAACATCACAACTACATATGCGTGTGTGTCCCTGGATTCACAGGCCGATTCTGCGAAACGAATATCAACGAGTGCGCTAGCTATCCATGTCTGAATGATGGCACATGTACAGACATAATTAACGCTTTCAACTGCACCTGTAAACAGGGATATTTTGATAGCACATGTTCTCAGTACGTGTGTGACAGAGACAATTCGCCGTGCAAAAACAATGGAACGTGTTTCATCGACAATGAAAATCATGTTGGATGCAGTTGTTTAAAGGCGTACACGGGTGACTTCTGCGAGCATTACAAGTGTGCTGACGTCTCGTGCAAGAATCTAGGTACTTGTGTGGACGGCGTATGTATTTGCCGACACGGGTTCCTGGGTCAGCTGTGCGACATGAATATATGTGAATTGATAGCGTGCCTGAACGGGGCGACTTGCACGAACGGCGCGTGTTCGTGCGCGCCTGGCTACACAGGTCGATATTGTACCACCGAAATCAACGGACAAAGCAAGACCTACAATCGGCCTGAACCAGAGCATTCTGGGACGCAAAATGGTGGTGGTGGTGGTGGTGGTTATCCGCCCACTCCTAGAGGTACCGTGCAAAGTGAAGCACCTTCCAATCTTGGTCACGCTGCAACAAAAAGTACAAGTAATAAGAAATCACAAACCAAAACTGACGGAGAACACGATAATGAAAACGTACACAGGCCAATATATACGCACCTCCTGAACGGAGAGGACCAGGACGGTGACAATTTTCCACGATTCGATACACCGCTGAGAAACGACCAACCGCCCAATGATGACCAGGCTATGACACAAACGACCCAGGCCCACGCAAACTGTGGCTCGAAGATAGACATCTTTCTGACCCTGGCCGTCGGGATCGTGTCGACTACATTGATATACACCGTCGGATAAACACCCCGATGATGACGGCTACACATCGTACGTCTCAGCGGTATACTTGTCCTCGCCGTTAGTGGGCGACATAATCTGGCTACGACACGCATATCCGGCAATTTCAGTCTATCAATCCATTGCCGACAATGGTCGAGCGTTGATGCTGACTTCACCTTCAATCAACCGCGACTGTCAAAAACAAAGAATGACGGATTACACTTGAACACATTTTACGTTTCATCTGCCGTTGCCTCAAAGATCGAGAGTTGACGGATAGCACATGAACACACTTTACGTTTCATCAGCCGTTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR050167	Family	Serine/threonine-protein kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG01928.1 global RNA-seq network