Gene detail

Detailed information of RPACG01649.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG01649.1	POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP	tig00000507	257787	260203	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG01649.1

GAAACCGCTGGTGGCACCATCTACACCACTGGCACCAGCGGTGCAATTGCAAGATGGCACAAGAACGGTGCACAAAAATATGGCGATGATGCTACAGTTGCTGCAGTCAAGTGTCGGCGGAAACAAGAAGCTCTCCATTGATGAGTTGGCTGCGACACTGAAGGTTCCGATTGACTCGAACACAAGGATGCTGCTTGAGAACCTCAGTGGACAGTTGCTCGTGGCCACAAAACCATCAGATCAGCCATTGTCAGCAGACTCCAGTCTCAGTAGGATTCCACCGGAGCCTGTAGACCATGCTCAACTGTACCAGGATGTGGCAAGTTCACGTCCATATGAGCCAGTAGATGGTGTAATGGGCTACCCGAACAAGAACCACGATTTGGAACCAGCTGTTGCAGCTGGTGCGTTTGTGAGTCAGCCAGGTGCGGCACAGGACAAGAATGCTGGTATCAAAGCCGCCCTGGCACAGCTTCTTGCACAACAGGGTGTTACTGTAAAGTTGGGAGCTAAGTCTTTTGCCCCATCTGGAAACTCTGGTGGGCCTACATCACCAAGGGCAACACGAGTCGTGTCGGATCGAGGAGATGGTGCTGTCACCAAGGGTGCTGGACCAACACCGCGTGGTGAACGGTTGTATTCACAACAGACTAGTTACGGCTCACAGATGTCAATATCTGAGGGGAACTCAAACAGTCCACCAGGGGGTGGTAACTTCCACGTCGGGTCACTAGATGGCGGCGCACCAGCACCGCCTGCCGAGACAATGTCGGTGCGAGCGAAGGTGCAGAGTTTCTTTGAGAAGAGTGACCAGCCACCTCATCATAGCACTACACAGAAGCCACCTCATCATAGCACTACACAGAAGCCACCTGCGTCACAGCCACATATCTTCCCCATAGTGGGCCACACGACAAACCCCAGACATCCCCCCAGCACCAGCTACATGGGCAGCACAGCAACATCGGCTCCCAGAGGCATCCTAAAGGGCAACTACCACGGTGCTGCTGGATCAAAAGGTCACGGTGGAATGTAGGGGGTACTAAATAAAGCATGTTGAACGCTTGTACATATGGTATACTTTGTCCTCCCTATTGTGATAAAATTGTGTACTTGAAAATAATTCCATGCAATATTAACTTGCTGTGGCATTGTGCACGCAGATCACATGACCATTGCTGTGCAGAATGCCAGGGATTTTCGTTTTGCACAATGTTGAGAAGGCACCTTCATGTGTGCTAATGTGGGCCATCATAACTGGGTTAGAAACATTGACAGTAAGTGGGCCAGTGCCCCAACAAATGAGAGTGTGCACTAAGTAACACTTGGTGTCGTTACTGCTGTTTCTAGGCAGCTGTTCACACTGACAGACAAGAAACAAAACTACTTACCGAATGTGTTGGTGATTTGTCATTTGAATTGTGAAATACTTCAGTTGTGGCACTGCGTTGTTTGTAGAATAAGAAAACTTCTGTAGTGTGCTTGGCAACCAACATCAGCCGTGTGTGTAATGTGCATAGCGCTAGTTGACACAAGCAATTTAGTAATGCCTTAGCGAATCTGTTCTGAAATGTCCGCATAACCAAATGCATGTTTATTGTATTACTCTTGGAGAATTCCTAATTCCCTAAGTGATGTCATCACCTTGATTTTTCTGTATTGACAATAAATTTGCAGCAATTAATTATTTAATTATTAATTGTTATAAGTTTTTGCCCGACCTGTGACATTTGCCCAACTGAAGTCTTTTTGCGATTGGCCATGCAACAGTGAGTTAGCTTTCGGGTTCTTTCCGGGTGTGAATTCTGAGTAAAGTTGGTGCATTCTGCACTTGGTAATTGATTGGTTGCCATGGTTATTGTATGCGTGGTTAAACACCCCTGGTGGAGGGTTGGTATAATTATAGTTAAGGTGATTTACTGAACAATGGTTACTGCATGTTATATATTATGTTATTGTCTGCATTATTAATGTTGAATAAACTGTGAATGGTCCATGTGGTTTTACTGACACATGTTCAAAGATTGTGACGCTAAACCAGAACAAGTTGTCAGTCTATAGCATGTTGTTCATTTGACTTCGTGCTCGAAAAAGGCATATCGAGTTGAATCTAAATACAAATCGACGATGCTTGCGGTATCTGAAAGAGAGAGCCAGCGTAATCAAAGAGAGCACTGATTTTGCACACTGATTTTGTTTGCACACTGATTTGGCGCTCTGATTTAATACACTGTCAATGACGTTGAACCTGTATATCCTTCACCTGCTTGTTTGCGATTTGCTCTACTTACCTATTCTTGATGACACTGGCTCTACCCCGCCTTTATCTTATCATGTCGACAACTTGTATGTGCGTTTCTTATGTGTGTGTGTGTTATGCTTTTACTTCGCAGTAAACAATTGTACTTGTTGCCACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF00644	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012317	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR051838	Family	Intracellular mono-ADP-ribosyltransferase ARTD/PARP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21328	POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005635	Cellular Component	nuclear envelope	Interproscan
GO:0006471	Biological Process	obsolete protein ADP-ribosylation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019900	Molecular Function	kinase binding	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0043539	Molecular Function	protein serine/threonine kinase activator activity	Interproscan
GO:0071782	Cellular Component	endoplasmic reticulum tubular network	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG01649.1 global RNA-seq network