Detailed information of RPACG01270.1 in Riftia pachyptila Gene info
Gene IDAnnotationContigStartEndStrand
RPACG01270.1DNA LIGASEtig0000038215966311596938+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF00644PARPPoly(ADP-ribose) polymerase catalytic domainFamilyInterproscan
PF00645zf-PARPPoly(ADP-ribose) polymerase and DNA-Ligase Zn-finger regionDomainInterproscan
PF02877PARP_regPoly(ADP-ribose) polymerase, regulatory domainDomainInterproscan
PF05406WGRWGR domainDomainInterproscan
PF08063PADR1_Zn_ribbonPADR1 domain, zinc ribbon foldDomainInterproscan
PF21728PADR1_NPADR1, N-terminal helical domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001357DomainBRCT domainInterproscan
IPR001510DomainZinc finger, PARP-typeInterproscan
IPR004102DomainPoly(ADP-ribose) polymerase, regulatory domainInterproscan
IPR008288FamilyPoly [ADP-ribose] polymeraseInterproscan
IPR008893DomainWGR domainInterproscan
IPR012317DomainPoly(ADP-ribose) polymerase, catalytic domainInterproscan
IPR012982DomainPARP1-like, PADR1 domain, zinc ribbon foldInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR036616Homologous_superfamilyPoly(ADP-ribose) polymerase, regulatory domain superfamilyInterproscan
IPR036930Homologous_superfamilyWGR domain superfamilyInterproscan
IPR036957Homologous_superfamilyZinc finger, PARP-type superfamilyInterproscan
IPR038650Homologous_superfamilyPADR1, C-terminal domain superfamilyInterproscan
IPR049296DomainPARP1-like, PADR1 domain, N-terminal helical subdomainInterproscan
IPR050800FamilyADP-ribosyltransferase diphtheria toxin-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10459DNA LIGASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003950Molecular FunctionNAD+-protein poly-ADP-ribosyltransferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0051287Molecular FunctionNAD bindingInterproscan
GO:0070212Biological Processprotein poly-ADP-ribosylationInterproscan
GO:1990404Molecular FunctionNAD+-protein ADP-ribosyltransferase activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for RPACG01270.1 global RNA-seq network
TOP