Gene detail

Detailed information of RPACG01240.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG01240.1	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	tig00000382	926351	963377	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG01240.1

ATGAACGACGATATGGATGAGACGGTTTACGGAACGCACGACGATTCCCGTGTGATGTCAGAAAAAGTGCAGAGTCTGGCTGCGGGTATTTATAAAGAATTCGAAAAGATGATAGGAAGGTACGACGAAGACGTCGTTAAACAACTCATGCCCTTAGTGGTCGGGATTCTGGAAGGATTAGATCAGTCCTATCAAGAGAAACAGGAAATTGATGTAGAGTTAGAGCTGCTACGAGACGACAACGAACAGCTGCTTACGCAATACGAACGGGAGAAGCAGCTTCGAAAAGCAACTGAACAGAAATTCCTTGAATCAGAAGACGTGGCTGAAGAGAGTCGGAAAGAATTTGAAACAAAGATTGAGAGTTTGGAGTCAATTGTTCGTATGTTTGAATTGAAGGCAAAGAATGCACAAGATCATGTTACCCGACTGGAGGAGCGAGAAGCAGAATTGAAGAAAGAATACTCTAAACTACATGATAGGTATACTGAGTTGTTTAAGACACATGTTGATTCGGTGGAAAGAACGAAGATGTTGATGGGAGGCGACCGTATCATGGAACTGGGAGCTAGTCCCAGGTCTAGAGGCGGTTTCCACCTGGCAAATCTGCGACAAACAGGAAATGCCAACATGGCATACGCTGCCGGCGACTCCAATGACACAACGCCAAGGAGTCCAACCATAGGAGCCATGGTCATGCCCTGTGTTGGCGACTCAGAACACCAGGGTGATAGGGCGAGTCTACGACATGAACTGCAGGGTGGTAATCTAGGCAGGGCGGAGACAGCTGATGGAGTGAGAGCGATGCGGGGAGCACGCAAGAGGGGCGTTGGTGCGGAGACGGCCGAGAAAGAACAGATCACGGACAGCATTGATGTCAAACACACAAGTGCAGGGACATCTGGCTCAGCCGAGACAACGTTACCTCATGTCGACAGTAGCAATGTAGACAGTGACACCGCTCCGGTGACGGAGTTTGACGAAGCATCAATAACTGGTGACGCCACCAAACAGACTCTCGATAATAATAATGATAGTGCAATAACGACTTGGGACATGAAATCATTTGACTCAAAGTTACTTACAAGCGCCAATGACAGCTTATATACACTTGAGTTCCAATTTGACGGGCTTGAGGACGACATAGGGGAAAGTCTGCCAGCTGATATGTCCCCTCCACCCATGGAAGATGACAGTTCAAAAACAATGCCAGCTCCAGTGCCGAATGCGAACACATCGTCCATCTATGATGAACTGGCTATGCAGGATGCCGACTTTGCAGGGGAGGTGGACGATGGCGTGGACGTTACTGGAATGAGCAAAGAAGTGGAGAATCTGATTCTAGAAAACACTGAGTTAATGGCCACCAAAAATGCACTGAATGTAGTCAAAGATGATCTCATCGTTAAAATTGACGAACTAGGAAGTGAACAAGAGATCTTGCGGGAAGAAATCACCTGTTTACAAACATCTAAGGAGCGACTGAAGAAACGTGTGTCTGAGTTAGAGGAAGAAGTGAAGAAATATAAGGAAGAGCTGGATAAGGCATTGAAGCGGGCTTCAGCGCAGCCTGAAGATGAGGATGATGTACCAATGGCCCAACGCAAGAGGTTCACGCGTGTGGAGATGGCACGTGTCTTGATGGAGCGCAATCAGTACAAGGAGCGGCTGATGGAACTTCAGGAAGCAGTTCGCTGGGCCGAGATGATCCGTGCATCCCGCGAACATCCAGACATATCCCAGAATCCAAAGAAAAAGTCAACAATGTGGAACTTCTTCAGCAACCTGTTCAGTTCATCCAACAAGCCCAGTAAGAGGCCAGCCCTGCCCGCAGCCACTGTCAAGTTCACGGCCCCCACTGCACACATCCAGCCTGTCGGGGACCCAAACAAGGAACAGCGAGATAAGTACAACCTGGGGGAGAAGGCAAAGGCCTACGACTTCATGCAGGATGAACTACTGACGGAGAAGATGAGGAAGGAGAGAGAAAAGGAGAGACGAGAGCAGTACAAGCAAGTGCGTGCACACGTCAAGAAGGACGACGGTCGCATGCAGGCGTACGGCTGGAGTCTGCCATCTAAGCTGCAGACAGGGGCACTGAAAGAGAACAGTCGAGTGCAGGTGCCTGTGCCAGTGCCCGTGTACTGCCGGCCACTCTTTGAGAAGGCCACTGAGATGAAGCTGTGGTGTGCGGCGGGTGTAAATGTGACTTTGGGCAAGACTAAGGACGGTGGATCAGTCGTTGGTGCCAGTGTGTTCTATTCGATCCCACCAGGAGGCAGTGGTGATGCAACGTCACCAAAGAGCACCGATGATGTGGAACGATTGGACAGTGAACTGAAGGAGCACGAGAAGAATGCTGGGGATCTTGCAGAAGAAAAACTCTCGTCTCTCGTCTGGCTGTGCAGCGCTGCTCACAACAGTTCTCGTATTGCCGTTGTTGATGCCAACAACCCCGGCGATGTACTTGAATCATTTCATGTCACTGCATCACATATCCTGTGTATTGCCAGTGTTCCCGGAGCAACAGAGGGTGACTACCCACTAAATGATGATGAGATTACATGTGAGAGCCCCAGCTCCACTGCCCCAGCAGAGCCTGCCACTGACGGCAGTGCCCCTTCATCAGAGGGGGAGGGAGGTGATTTACAGGGCATGATCGGGGGCATCACCTTTGTGCAGTGCGCCACTGGCGCCCCTAGTGCCGCTGAATGCCCCCAGGCCTCCTCACCAACAGATGAAGCCAGTCAGCGTGCAGCTACGCCAACCAGTGACTCATCAGAGAAGACCCCAGAAGACGTGAAGGTTGTGAAAGCGACCGGAGATCCAGTGCCCTCTGATGAGAACGAGACAGTAGAAATGAAAGAGATTCGTTCGTTGAATTCCCCAAGCACACTCGTGCAAGATGGAATCACGGATGTCAGCGCTGACAGTCAGCTACTGAGTGAAGAGGTGCAAAAGATGAGTAGTCTGTCAGCCACCATGTGGCTCGGCTCACAGAGTGGCAGTCTGTACGTCCATTCGGCAGTGGCCCAGTGGAAGAAATGTCTTCACTCTGTCAAACTGAAAGATTCTGTCCTATGCATTATACATTTGAAGGGTCGTGTCTTCGTGGGGCTGGCCAATGGCTCAGTGGCTGTGTTTCGTAGAGAGGCCAGTGGCCAGTGGGACTTGACCAACTACCACCTGATTCACCTGGGCAAGCCGAATCAGTCCATCCGCTCCATGTGTATCGTTGCCAACACTGTGATGTGGTGCGCCTGTCAGAATAAGATTCACATCATCCACCCGCAGACTCTCAAGCTGCAGAAATCATTTGATGTGCATCCTCGCAAGGAGAGCCAGGTGAGGCAGATGGCATGGCTGGCCGATGGCGTCTGGATCTCAATACGCCTTGACAGCACACTGCGACTGTACCATGCATATACACACAAGCACCTCCAGGACATCGACATAGAGCCCTATGTCAGCAAGATGCTAGGAACTGGCAAACTGGGCTTCTCCTTTGTGCGGATCACATCTCTGTTGACATCTTGTAAGAGGCTGTGGATTGGCACAGGCAACGGAGTGATCATCTCGGTGCCACTCTCAGAGGCCAACAAGCAGGCGGTGACCGTGAACTCAGGGTCAAGGCCAGGAGGGATCGTGCGGGTGTACAACGACGTCAAGACTGACAGTGTCACTCCGGGTAGTTTCATACCTTACTGCACAATGGCACAGGCACAGCTGAGTTTCCACGGCCACCGCGATGCAGTCAAGTTCTTTGTTGTTGTGCCGGGAGTGGAGATGAAGAGTCTGAGTGGAGTGTCGAATGAGGAGACAGCCACAGAGAAGGCAGACCAGGGCAAGGGAGACAGTGTCGTCTCTCAGCTCAGTAAGAACATGCTCGTCATTTCAGGCGGAGAAGGATACATCGACTTCAGAATAGGAGACGTTGATGAAGATGGCAGTCAGCCAGAGGAAAATATGGAATCGGGCAAGAGTAAAGGAAGTAGAAGTCATCTTATCGTCTGGGAGATGTCTGGCTGTCCCATCCGCTGA

Transcript

RPACG01240.1

CACGTGATCTGCAGTATTTACCAGCAATTTCCTGTAGTTTTGACAGGTAATGTAGGAATCCGCGCACATAATATACCGTTGTTGTGCACTTTTTATCATAAATGAGTGCGGGTGGCTCTGCCCGCTCGTAAAAGAGCTTACCGTAGTATCGTTTTGTCAGGAAAACATCCGAATATGAACGACGATATGGATGAGACGGTTTACGGAACGCACGACGATTCCCGTGTGATGTCAGAAAAAGTGCAGAGTCTGGCTGCGGGTATTTATAAAGAATTCGAAAAGATGATAGGAAGGTACGACGAAGACGTCGTTAAACAACTCATGCCCTTAGTGGTCGGGATTCTGGAAGGATTAGATCAGTCCTATCAAGAGAAACAGGAAATTGATGTAGAGTTAGAGCTGCTACGAGACGACAACGAACAGCTGCTTACGCAATACGAACGGGAGAAGCAGCTTCGAAAAGCAACTGAACAGAAATTCCTTGAATCAGAAGACGTGGCTGAAGAGAGTCGGAAAGAATTTGAAACAAAGATTGAGAGTTTGGAGTCAATTGTTCGTATGTTTGAATTGAAGGCAAAGAATGCACAAGATCATGTTACCCGACTGGAGGAGCGAGAAGCAGAATTGAAGAAAGAATACTCTAAACTACATGATAGGTATACTGAGTTGTTTAAGACACATGTTGATTCGGTGGAAAGAACGAAGATGTTGATGGGAGGCGACCGTATCATGGAACTGGGAGCTAGTCCCAGGTCTAGAGGCGGTTTCCACCTGGCAAATCTGCGACAAACAGGAAATGCCAACATGGCATACGCTGCCGGCGACTCCAATGACACAACGCCAAGGAGTCCAACCATAGGAGCCATGGTCATGCCCTGTGTTGGCGACTCAGAACACCAGGGTGATAGGGCGAGTCTACGACATGAACTGCAGGGTGGTAATCTAGGCAGGGCGGAGACAGCTGATGGAGTGAGAGCGATGCGGGGAGCACGCAAGAGGGGCGTTGGTGCGGAGACGGCCGAGAAAGAACAGATCACGGACAGCATTGATGTCAAACACACAAGTGCAGGGACATCTGGCTCAGCCGAGACAACGTTACCTCATGTCGACAGTAGCAATGTAGACAGTGACACCGCTCCGGTGACGGAGTTTGACGAAGCATCAATAACTGGTGACGCCACCAAACAGACTCTCGATAATAATAATGATAGTGCAATAACGACTTGGGACATGAAATCATTTGACTCAAAGTTACTTACAAGCGCCAATGACAGCTTATATACACTTGAGTTCCAATTTGACGGGCTTGAGGACGACATAGGGGAAAGTCTGCCAGCTGATATGTCCCCTCCACCCATGGAAGATGACAGTTCAAAAACAATGCCAGCTCCAGTGCCGAATGCGAACACATCGTCCATCTATGATGAACTGGCTATGCAGGATGCCGACTTTGCAGGGGAGGTGGACGATGGCGTGGACGTTACTGGAATGAGCAAAGAAGTGGAGAATCTGATTCTAGAAAACACTGAGTTAATGGCCACCAAAAATGCACTGAATGTAGTCAAAGATGATCTCATCGTTAAAATTGACGAACTAGGAAGTGAACAAGAGATCTTGCGGGAAGAAATCACCTGTTTACAAACATCTAAGGAGCGACTGAAGAAACGTGTGTCTGAGTTAGAGGAAGAAGTGAAGAAATATAAGGAAGAGCTGGATAAGGCATTGAAGCGGGCTTCAGCGCAGCCTGAAGATGAGGATGATGTACCAATGGCCCAACGCAAGAGGTTCACGCGTGTGGAGATGGCACGTGTCTTGATGGAGCGCAATCAGTACAAGGAGCGGCTGATGGAACTTCAGGAAGCAGTTCGCTGGGCCGAGATGATCCGTGCATCCCGCGAACATCCAGACATATCCCAGAATCCAAAGAAAAAGTCAACAATGTGGAACTTCTTCAGCAACCTGTTCAGTTCATCCAACAAGCCCAGTAAGAGGCCAGCCCTGCCCGCAGCCACTGTCAAGTTCACGGCCCCCACTGCACACATCCAGCCTGTCGGGGACCCAAACAAGGAACAGCGAGATAAGTACAACCTGGGGGAGAAGGCAAAGGCCTACGACTTCATGCAGGATGAACTACTGACGGAGAAGATGAGGAAGGAGAGAGAAAAGGAGAGACGAGAGCAGTACAAGCAAGTGCGTGCACACGTCAAGAAGGACGACGGTCGCATGCAGGCGTACGGCTGGAGTCTGCCATCTAAGCTGCAGACAGGGGCACTGAAAGAGAACAGTCGAGTGCAGGTGCCTGTGCCAGTGCCCGTGTACTGCCGGCCACTCTTTGAGAAGGCCACTGAGATGAAGCTGTGGTGTGCGGCGGGTGTAAATGTGACTTTGGGCAAGACTAAGGACGGTGGATCAGTCGTTGGTGCCAGTGTGTTCTATTCGATCCCACCAGGAGGCAGTGGTGATGCAACGTCACCAAAGAGCACCGATGATGTGGAACGATTGGACAGTGAACTGAAGGAGCACGAGAAGAATGCTGGGGATCTTGCAGAAGAAAAACTCTCGTCTCTCGTCTGGCTGTGCAGCGCTGCTCACAACAGTTCTCGTATTGCCGTTGTTGATGCCAACAACCCCGGCGATGTACTTGAATCATTTCATGTCACTGCATCACATATCCTGTGTATTGCCAGTGTTCCCGGAGCAACAGAGGGTGACTACCCACTAAATGATGATGAGATTACATGTGAGAGCCCCAGCTCCACTGCCCCAGCAGAGCCTGCCACTGACGGCAGTGCCCCTTCATCAGAGGGGGAGGGAGGTGATTTACAGGGCATGATCGGGGGCATCACCTTTGTGCAGTGCGCCACTGGCGCCCCTAGTGCCGCTGAATGCCCCCAGGCCTCCTCACCAACAGATGAAGCCAGTCAGCGTGCAGCTACGCCAACCAGTGACTCATCAGAGAAGACCCCAGAAGACGTGAAGGTTGTGAAAGCGACCGGAGATCCAGTGCCCTCTGATGAGAACGAGACAGTAGAAATGAAAGAGATTCGTTCGTTGAATTCCCCAAGCACACTCGTGCAAGATGGAATCACGGATGTCAGCGCTGACAGTCAGCTACTGAGTGAAGAGGTGCAAAAGATGAGTAGTCTGTCAGCCACCATGTGGCTCGGCTCACAGAGTGGCAGTCTGTACGTCCATTCGGCAGTGGCCCAGTGGAAGAAATGTCTTCACTCTGTCAAACTGAAAGATTCTGTCCTATGCATTATACATTTGAAGGGTCGTGTCTTCGTGGGGCTGGCCAATGGCTCAGTGGCTGTGTTTCGTAGAGAGGCCAGTGGCCAGTGGGACTTGACCAACTACCACCTGATTCACCTGGGCAAGCCGAATCAGTCCATCCGCTCCATGTGTATCGTTGCCAACACTGTGATGTGGTGCGCCTGTCAGAATAAGATTCACATCATCCACCCGCAGACTCTCAAGCTGCAGAAATCATTTGATGTGCATCCTCGCAAGGAGAGCCAGGTGAGGCAGATGGCATGGCTGGCCGATGGCGTCTGGATCTCAATACGCCTTGACAGCACACTGCGACTGTACCATGCATATACACACAAGCACCTCCAGGACATCGACATAGAGCCCTATGTCAGCAAGATGCTAGGAACTGGCAAACTGGGCTTCTCCTTTGTGCGGATCACATCTCTGTTGACATCTTGTAAGAGGCTGTGGATTGGCACAGGCAACGGAGTGATCATCTCGGTGCCACTCTCAGAGGCCAACAAGCAGGCGGTGACCGTGAACTCAGGGTCAAGGCCAGGAGGGATCGTGCGGGTGTACAACGACGTCAAGACTGACAGTGTCACTCCGGGTAGTTTCATACCTTACTGCACAATGGCACAGGCACAGCTGAGTTTCCACGGCCACCGCGATGCAGTCAAGTTCTTTGTTGTTGTGCCGGGAGTGGAGATGAAGAGTCTGAGTGGAGTGTCGAATGAGGAGACAGCCACAGAGAAGGCAGACCAGGGCAAGGGAGACAGTGTCGTCTCTCAGCTCAGTAAGAACATGCTCGTCATTTCAGGCGGAGAAGGATACATCGACTTCAGAATAGGAGACGTTGATGAAGATGGCAGTCAGCCAGAGGAAAATATGGAATCGGGCAAGAGTAAAGGAAGTAGAAGTCATCTTATCGTCTGGGAGATGTCTGGCTGTCCCATCCGCTGAGTCACCCCTTCCACTCTCTCCCTCCTGCTTTACTTCCACATCTACCTTTGCCCTCAAAGGCACTTGTACGAATACAATGCATGCATATAACAATGGAACTGTGCCATCACTGTATGCCTATTGGCCTACATCAGAATGGTGCAATTGCCAACAATTGCTATGCTACAGTTGTTTCAATCACACAGCAGTATCTGTGTTTTGTATGCCAAAGCAACAGGGTTTGAGGCAAGTAATTGTCCAAATCAACGGATGACTTATTTCTGCTACTTGAGATCCTAAGTATGACATGAAAAATCAATCCATATAATATACATACTGGATGTATATTTGTTTTGCATAGTGTATATTATGTATATATTATTATGTTTTCATTAAGTGTTTAATTCTGTGTTTCTTCTCTTACTACCACATTGGTGTCGTTGCCATTGTGGCAAATGACATTTCTATAAAAGCGGACTACATTGATGTTCTTCTATCACAATGGTAGCTGATTTTCTTTAATTAAAGACATCAATTACACAAGAATTATGGCAACAATGCTGGTAAATAATGAGTACTAAGGTGTACTTATATTTTTTCGTTACTGCTTTGTTTTGAGCAATTACTATATAATTGTTATTTTATCCAGACCTGTTAAAGATATAGTCTTTATGTTTTTGTCAATTTAGCACAATGTAACTCTCTGTAATGTATGTAGTGTATTATGATTTATTTGGTACTGTTGCGCACAATAATACATAGAAGTAAGGGTTGACATGGGTTTACATTCTTCCTGTTCCGGAACTAACCAAAAAATACACATCTCAGAAGGTACGTGTACACAAGCACTAACACACAAATGGAAATGTTGAAATCTTGATGAGCTAAACGCTGGATTGAAATATTTTTAAATCTTGCAAAAACCTTTCCATTTCCTACCAGCATTGTTAGCAAATTCATCCTATTTGGCATTATCGGCACGTCATATTTAAGACCTCAACACCGATATCATTTCTATCACATACACAATAGTTAGGAGCAAGCCACTTCTAAGCTTACGCACAAATTATATGAACATAACACATTACGATGATATTTGAAATAACTATTTTTTTAGAAGTGTGCAATCATGGGTTTCATGTTTGACTTATCGTATACAAACATCATTAATGACAGTTTTAATTTGGATATTTGTGTTAATAAAAGTTGATGCCCAACAACGTGTACCGGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR013507	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR038973	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR042120	Homologous_superfamily	MutL, C-terminal domain, dimerisation subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0032300	Cellular Component	mismatch repair complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG01240.1 global RNA-seq network