Gene detail

Detailed information of RPACG01183.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG01183.1	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	tig00000382	49138	62325	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG01183.1

CGGAGGATCGGTGTTGTTGCCGTTGTACGTCCCGGCCCAAGGAATTAGTTGTCATACAAAGTCACCGTTAGCAGAGCGGAACAAACGCGTAGGCTGGTGTCTGACAAGAATGAGTCATCAATAGGTCCGAAGGCGTAACTCATTTCACCGTTGTGTAACGTTGTCGGTGTCTCGGCGCAAAGACCGTCAACCGACCGCGTCACAGGAACATTTTGCGGGGTTCTTTTCGCAACAAGGAATGCATGGACACAATTCTGGGTAAGTCCCTGTTTCAAAGTAAATGTAGTCACATTTCAATAGTGTATTTCTGTGTATGTATGAAGAGGATAGCAGCAGTAGTACTTCTTAGGAGCACCGAGCAGACGTCTTCACTACCCAGTTCAAGGCAATTGACGAGCACCCACTGCGAGGACGCAATGACTCCACTCGGCACCTTCATCGTCGTTGGCTGCTTGCTTCTGGTCCGATCTGAACTCGGTATCGGCCCGACTGGCGCGACTGGCCAGAATGGAGCGCCTGGACCGACTGGGATGCAGGGACGTAGCGGGGCTACCGGTATGAGAGGACGGGATGGGTATACAGGACGTATGGGGATGACTGGATCGTCAGGTTGGACTGGTCCTATAGGAGATACTGGAGCGACTGGCAGGTTCGGACCTGTTGGAGCGACCGGACTAAGGGGACCTGCCGGGGGACCGCCCGGTCCCATGGGAGCGACTGGACGGATGGGTCCGGCTGGTGGACCGCGTGGACACACGGGCCCGATGGGTCTAAGAGGCGGTGAAGGAAAAACGGGGCCGACGGGACCGAGGGGACCAGCAGGAGGCCCGCCTGGAGCTATAGGTGCAACAGGAGGAAGGGGGAAAGATGGAGAAACAGGACCACGAGGCGCAACAGGACCAATGAGTTCCACTGGTGGTCTGACGGGGTCTACTGGGATCTATGTAGGAATTTCCTTTGGCACACAAATCTTCGGTTTCCTTGTCGTTGCTGTGGCAGTTTACATCTATAGGACGTATACTTGTCGCAAGAAGTCAGCTAATGACGCTCATGATGGGGCTCCGGTTCCACTAACTACCGTTGTATCGGAAGCTAACACCGGAGGTCCAGCTAGTACAAACGAACATTTGAAAGCCGTCGCAATTCCCGATTCACCATATGAGAGTCTTGATATGGAACACACAGGACAAGAGTAATCATCTGTATAGTACAACAGTGCCAATGTAACGGATACTTCACTGCGCGTGCTTGCGCTTTTATGTCTGTTTGGTTGGTTTACCATTCAGTTTGGTTGGTTTACCATTCAGTTTGATTGTATACAGAGGTGTAAAACATAGACCATCGAATATAATTTTATTTTTATGCTTTTTTATGCTTTTTATGTCTGGTTTATGAAGCAACGACGATTGCATATATTTCAGTTATAGGTTAACCACAATTCTACGAGAAAAACGAACGAGATGTTATTTCACCCCCTAAAAAGACGAATTTCATACGGGGACAAGTGAACGATACTTATTTGGAAGCCTGATTCTGTTTAAAGTCTAGTTATTTGTAAGCCTAATTCTGTTTAGCGTCTAGTGTGGTTATTTGCTCGTCAATCAACTTTCGGTGTCCCTTACAATTTGAGCTACTTTCGTACAACAGCATGAAATACATTATTGCTACCTGAAAAGTATACATTTGTGGAACACCGTATTTACTTATCGCGGCCTACGTATGTTAAGGGTACTTCATGAATGTATTAATTGCTTCCGACCCGCAATGGTTGAGGACGTGCACGTTTGCATTGCGCAATAATTTCGCAATATTTATTAAACACAAGTTGCAAGACTAGATGACATTAAAGCTAATAATTACTCTCAATGTGTTTGTGTTGCTGACTCTGTGTCGAGTTGTGCGACGTTATGGAACTCATTTCATAAAACATCGAACGTTCAAGATATATTGCATTTCGACAGTGTTCTACATAATAAAACTAGCCAATTTGTCGACGATAGCAAGTGTGCTTGCGAAGTGACGCAACAAACACGTACACGTCAAGTGCAGCCATCACATTCTTGTCATCCTAATTCCATCTTGCCACGACACCGGTGTCGAGCAAGTTCGTAATTGTCGAAGAGCTGGTCTCCTAGTTGCATTTCAGACTCATTAGGTATATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR051681	Family	Serine/Threonine Kinases and Pseudokinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44329	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG01183.1 global RNA-seq network