Gene detail

Detailed information of RPACG01022.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG01022.1	ADENYLOSUCCINATE LYASE	tig00000298	2351126	2353742	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG01022.1

GTCGGAGTAATAAGCGTATGGCACGGGGATAACATATTATTCGACTATTGCACCATTTTATCTTTTTTAATGTGGAAACAGTTAATAACGTTGTTGAGGAACTGATGATTCACTGGGAGTTTTGGGAATAGAACAATATGTCTTTATCTGTATAATCAGATACTTGCTAGATGCGATAGCTGTTGTAATGATACTGGACATTGCCGTGCGGTGACAGGTGTGGTACAGGCGGAAGTCGGGTCCGTTGAACAGTGACAGCGAGGCAATGAACCGACCAGACTCGATCAGCATGGAGGCGAGCGACACGATGAGCGACGGGGGCGTGTCGTCGCACCAACAGCTCATCGTCGACTTGGTCATCGAGCCTCGCTACACGCGTCGTGTCGACGACGAATCTCGCTGGACATTAGAGACTTGCTCTCGGCCATTGGCCGACATCGATGTGGGCAGATCTAAAGCGTTCGTCACATCCCGGCCTCCCACTGGAATCAAGACCAGGCGTTCGCCGTACACGGATCATCCAGCTTCGGAAAAACACGCGGCAATTACACATCACATCGCATCGCGTCACAGCACTCCGGCGGAGTCACTCGACGAGTCGCCGCCTCCATCGTCCAAGTCGACAGTTCGGGCATCGCCGAAGGATGAAGGTTCAACAAGAGGGTGTCGTGTCGGTCAACATAACGTAGTAAGACCCCGTAAATTAATAAGGGAGCCGGTATGCCAAGTCACTCGCTCCTCCACCGATAAGGCGGCGAGGGAATGCACCTGGCATTGCGAGCCACGTAAGACCGAATCAACACCGGTTTCGCCTTTTCTTGACAAGTCGCAGCGCCTGAGTAGGAACGGCGGTGCAACCAGTGCAGATGTCGTAAGACAGTCGTCACTCGATACAGTTTCGGTCTCGCTACAACAAGTCGTCACAACGCCGACACAGCAAGCCGGAGCAACATCTCGACTGCAGCAAGCTGCTGTCACAACATCCCCGTCTCCACAACCCTTCAGTAGGTCCCCATCCCCACAAACCGCTTCAAGATCCCCATCGCCACAAGCCCAGTCGAGATCCCCATCGCCACAAGCCAAGTCGAGATCCCCATCGCCACAAGCCATATCGAGATCCCCATCGCCACCAGCCAAGTCGAGATCCCCATCGCCACAAGCCAAGTCGAGATCCCCATCGCCACAAGCCATGTCGAGATCCCCATCGCCACAAGCCATGTCGAGATCCCCATCACCACAAGCCAAGTCGAGATCCGTCACGAGATCACCGCCAAGGCGAGTCGTCACGAGATCACCGCCACCGCGAGCAGTCACGAGATCACCGCCATGGCGACCCGCCTCGAGATCGCCGCCACCGCGAGCCGTCACGAGATCACCACCACCGCGAGCCGTCACGAGATCACCGCCACCGCGAGCCGTCACGAGATTACCGCCACCGCGAGCCGTCACGAGATTACCGCCGCCGCGAGCCGTCACGAGATTACCGTCACCGCGAGCCGTCACGGGATCACCGCCACAACGATCCATCACGAGGTCACCTGCCACGGCGAGCCATCACGAGATCTCCGCTACGACAAATCATCTCGAGATCCCCGTCACCACGATCCGTCACGAGATCCCCGTCACCACGACCCGTAACGAGATCCCCGTTACCACGGCCCGTCACGAGATCCCCGTCACCACGGCCTGTGACGAGATCCCAGCACCAACGAGTTGTCACGTCGGCCTCAAGACCTGGCATCATGAAGGTGGTCGGACGTAATCGGTCCTCGCCAACGCCCGCCAAGTCTACTACGTTCGAGGTGGACAAGCAGCAAATATACGCGCTATCAAGTCGGTCGTCGACGTTTAACTTAAGCACATCGCGGTCGCCCAGTCCTGGCCATGTGCAGCAGTTTGACAATGACGTAATGTCGCACTGTTCATCATCAGCCGGTCGCCAGATATCGTTGTCTCCATCTATGGATAGTGTAATGCAACGGAACGACGCACAGTCACGAGGACTGAAGATGGACAAAACAATGAGTGTTCAATTGGCAACTGAAAACGTCTCTTTATATGTTCGCAAAACACAGTTGCCGTCAGAAAAACAGAAGACAAACGCGCATGTAGCCTCGTCCAAGTCATCCCTCAGCACCATAGCCGCTGAGGTGCCGAACAAGTTTCGCTTCAGCCACATCTCATGTGGGGGGAAGTCAGGCTTGAACTCCGAGCCGCTCAACGAATCGGTACGCGACCACAAAGACACCTACCGCGTACCAGCAAAGCAAACAAAAGGCATCGCCCAGTTGGGCTGTTTTCCACAGAGTGCAATTAGCGTGCAGTATAACCCAGGCAACCGCTTTCCCCACACCGAGGTACTCAGATAGACAACCAGTTGTTTACATTTCAGCATATCAGATGCGTGCAGTAATAGTGTTGTGTTCTTATACGTTCTAATGGGTTCATGTTAGCGAGTGGCTGCTCAAAACCAGTTAGCGCATTATTAGAGATGAACATTGCCTCTTGCTGTAAACTGGAAACCTGTTTAAAAGCACATTTAAAATAAAGTGGTTTTATTTGACGGAAATTCTGATAGTGTGCAATAAAGCTGACATGAAGTTTGTTTTAATTGCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00206	Lyase_1	Lyase	Domain	Interproscan
PF00811	Ependymin	Ependymin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001299	Family	Ependymin	Interproscan
IPR008948	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR022761	Domain	Fumarate lyase, N-terminal	Interproscan
IPR024083	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43172	ADENYLOSUCCINATE LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004018	Molecular Function	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan
GO:0044208	Biological Process	'de novo' AMP biosynthetic process	Interproscan
GO:0070626	Molecular Function	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG01022.1 global RNA-seq network