Gene detail

Detailed information of RPACG01000.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG01000.1	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	tig00000298	2052451	2066903	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG01000.1

ATGTTTGTTCGACAACATGGGTTTGGCGAAGTCCTACATGGCGAACAAGAAAAGGATGAAAATGCGCAGTTAATGGAACTTGATAAAGGTCTGAGATCTACTAAAGTGGGCGAACAGTGTGAAGCAATTGTGAGATTTCCTCGTCTCTTTGAGAAGTATCCCTTCCCCATCCTGATAAACTCGGCCTTCCTCAAGCTAGCTGATGTCTTCAGAGTGGGGAGTAACTTTCTGAGACTTTGCATCCTGAAGGTGACACAACAGAGTGTCAGACATCTCGATAAAATACTCAACATCGATGAGTTTGTACATCGTATCTATGTTGTGGTGCACAGTAATGACCCTATTGCGAGAGCAATCACGCTCAGGACATTGGGTTGTGCAGCTTGCATTATCTCAGAGAGAAAGAATGTTCAACATAATGTAATGAAGAGTCTCGACTCAAATGATGCAGTCGAGGTAGAGGCAGCTATTTATGCAGCAATGCACTTTGCAGAGGAGTCAAAGAGTTTTGCAACGAGTATATGCGACAAACTCGCTGAGATGATCGAGAGTTTGCAGACACCTGTCGAAATAAAACTGAAACTGATCCCGATCTTCCAATACATGCACCGTGACTTGGACACAATTGGCAAGGTGCGGCGTGTGTCTGAGAGGCTGCTACCCAGTTACCCCGCCCGGGGGTTTGTATCTGTCACCCTTCACACCCTCTCCCAGTTGTCTGCCCGATCCCTTGTAGACATCCCTCAACAGGTGGAGCTGTTACTGTCCTATGTACAAACAGATGTGCGGAAGGCTGTAAAAATGTTAGCTCTGACGGACTTGAGATTGCTGGCTACGAAAGGTCCACACATGTGGCGTAATCAACATGTTGAGGTGTTGTGTCGGTTTCTACTGAGTACACCTAATGCCAACCTACAGTTGGCCACTCTCAATGTCCTGGCAGCTCTATCATCAACCATTGCTGTTGGCTGCTTCTCCACCATTCCAGAGAGTCTCCTGGAGGACTGTTGTGTGAGGTTCTGTTACCACATCAACATGCCGACTGTGTCCAAGGCGCTGCAACTGTTCACACACATCGCAGCTGCTGCAATCAAGACATCCAAGGACCGGTCAGCAAAAGTTGATCCTTCCTTGGACAATGGTTTGTTGTCCCAGGTCAGTCTAGCACTGGAGTCCATCCTGCTTCAGACCACTGGTCAGCAGTCGACGTCTTCACTAGCGGCCTTGAAGTGCATCCTGCAGTCTGTTGTCAAACTGTGTCGGGGATGTTCATCTCTGGCTGATCAATTCATCGACACCTTGCTATCAACACTTGGCAGTGTGCCAGGTGACGTTGCTATCCTGTACTGCGAGTGTCTATCAGCCATCACGAGTTACCATAGCGACACGCTACAGAGTCTGGTGCCAGACATCTCTCAACTTCTCCAAGTCATTGTCCAATCAGAGGAGGCCAACCGCGACAGACTAATAGTAGCCATGGTGACCGTGCTGTTTCAAGCGTATGTTGGTCAGAGCCTACCTTTGGAGACACGTCACCTCATACTTGATGTCATTGGCTCGCTCAGCTGCTGGCGAGTCTACCAAGTTGGTCGCCAGGCGTCTCGGTACGCCCACCACGATGTCGCACGCCAGATATTTGGCAGTCTCGGAACACGGGTGTCATCAGAACACTACTACTTCTGGCTGAGTGGTCTCAAGGACATATGCCACGGTGAGAGCCACCTGCTGGGGGAACGCACCCACAACGTGACTGTCTTTGTCGACAAGATAGCCAAGGCAGAGAACTGTTACCACAAGGGACTGTCAGCCCTCAAGGCCGCGATGACCCCCAGTTGCCTCCTGACTTTCCCGTCCACCTATGTCCAGCTGCGCACTCGGACACTGCAGGCCTTCAGCCAGGTGGTCAAGGTCTGCTGCAGCTTCCAGACAAGTCCACCACCAGCCATAGCAACGTCTCTGGCGGTCAGCACCGGTCAAGAGATACACAAGTGTGGACACGTCATAGCCCAGCTGGAGAAATGTGGAGAAGAGTTTGACGAGCTCCACCTCAAGTACAGTGAACTGTACTGCAGTAGTTTTGATGCTGACACAGCCACTCTCTCTTCACTCACAATACTGCAGCGATCCTGTCAACTAATGACACATGTGCTTGAGACAATCCTCAAAGCCGTGCACAGGACGGAGGGAGCCATGGACCCCCCTGGACCAGTGTGTGGCAGTGACTCTCTTGTAGAGACCCAGACATGGCAGGAGGCGTTCAGTGAGGTGCAGCAGATGCTCCACAAGGCCTGTCACGCCCCCACAGACCTCCCTCTGTCCTACCACCATCTCAACTGCATTGAGGGTGTTGCCATGGTGCTGGGTCAAGTACCCCTCTGTCTGCCTCGCTACTTCTTCCAGAAACTACAATCAACTCACATCAAACTGGCGATCTCAGCCCAACAGAAGTCAGCCAACGAACCAATTTCTATAACACATGACACCTTCCTGACCCTCAAGGTCGAGGGGGTTATACAACATAGGGCACGGCCAGGTTTATATCGCAGCATTAAAAAGGTGCAGCTGACCGTGAATACAGAACAACAAAGTCGGACTCAGATGACTTCTGTTGATGGCAAACTTCACGAGAATCCAACGAACCACATGAGTCAGCAGGTGGAGCCACACAATGACTATTTCAGCACGCAGTTCCTGCTCACCTTTCCTGTCACTGGTGTCCACCAGGTGGCAGTTGAGGCAGCAGTGGTAGATGAGGACGATGCCGTGTGGATGACAGGACCACGTGACACAATCACAGTCAAGTCATATGACGAGGCGGTGCAGAGACAGAAACAACAGCAGTATGCTGCACAGCGCCAACAACAGAGGGCAGCAGCAGTTGCAGCAGCCTCTGGAAGTCTTTCTAATGTTTGTGGATGA

Transcript

RPACG01000.1

GGGAAACATTTGAGCTCCGACACAGTACACTTCCTGTCGGCGTTAAGCGCGTTCTGCTAAATATCGTTTCCAATAAAAGTGCGCAAATTTGTAACCATGTTTGTTCGACAACATGGGTTTGGCGAAGTCCTACATGGCGAACAAGAAAAGGATGAAAATGCGCAGTTAATGGAACTTGATAAAGGTCTGAGATCTACTAAAGTGGGCGAACAGTGTGAAGCAATTGTGAGATTTCCTCGTCTCTTTGAGAAGTATCCCTTCCCCATCCTGATAAACTCGGCCTTCCTCAAGCTAGCTGATGTCTTCAGAGTGGGGAGTAACTTTCTGAGACTTTGCATCCTGAAGGTGACACAACAGAGTGTCAGACATCTCGATAAAATACTCAACATCGATGAGTTTGTACATCGTATCTATGTTGTGGTGCACAGTAATGACCCTATTGCGAGAGCAATCACGCTCAGGACATTGGGTTGTGCAGCTTGCATTATCTCAGAGAGAAAGAATGTTCAACATAATGTAATGAAGAGTCTCGACTCAAATGATGCAGTCGAGGTAGAGGCAGCTATTTATGCAGCAATGCACTTTGCAGAGGAGTCAAAGAGTTTTGCAACGAGTATATGCGACAAACTCGCTGAGATGATCGAGAGTTTGCAGACACCTGTCGAAATAAAACTGAAACTGATCCCGATCTTCCAATACATGCACCGTGACTTGGACACAATTGGCAAGGTGCGGCGTGTGTCTGAGAGGCTGCTACCCAGTTACCCCGCCCGGGGGTTTGTATCTGTCACCCTTCACACCCTCTCCCAGTTGTCTGCCCGATCCCTTGTAGACATCCCTCAACAGGTGGAGCTGTTACTGTCCTATGTACAAACAGATGTGCGGAAGGCTGTAAAAATGTTAGCTCTGACGGACTTGAGATTGCTGGCTACGAAAGGTCCACACATGTGGCGTAATCAACATGTTGAGGTGTTGTGTCGGTTTCTACTGAGTACACCTAATGCCAACCTACAGTTGGCCACTCTCAATGTCCTGGCAGCTCTATCATCAACCATTGCTGTTGGCTGCTTCTCCACCATTCCAGAGAGTCTCCTGGAGGACTGTTGTGTGAGGTTCTGTTACCACATCAACATGCCGACTGTGTCCAAGGCGCTGCAACTGTTCACACACATCGCAGCTGCTGCAATCAAGACATCCAAGGACCGGTCAGCAAAAGTTGATCCTTCCTTGGACAATGGTTTGTTGTCCCAGGTCAGTCTAGCACTGGAGTCCATCCTGCTTCAGACCACTGGTCAGCAGTCGACGTCTTCACTAGCGGCCTTGAAGTGCATCCTGCAGTCTGTTGTCAAACTGTGTCGGGGATGTTCATCTCTGGCTGATCAATTCATCGACACCTTGCTATCAACACTTGGCAGTGTGCCAGGTGACGTTGCTATCCTGTACTGCGAGTGTCTATCAGCCATCACGAGTTACCATAGCGACACGCTACAGAGTCTGGTGCCAGACATCTCTCAACTTCTCCAAGTCATTGTCCAATCAGAGGAGGCCAACCGCGACAGACTAATAGTAGCCATGGTGACCGTGCTGTTTCAAGCGTATGTTGGTCAGAGCCTACCTTTGGAGACACGTCACCTCATACTTGATGTCATTGGCTCGCTCAGCTGCTGGCGAGTCTACCAAGTTGGTCGCCAGGCGTCTCGGTACGCCCACCACGATGTCGCACGCCAGATATTTGGCAGTCTCGGAACACGGGTGTCATCAGAACACTACTACTTCTGGCTGAGTGGTCTCAAGGACATATGCCACGGTGAGAGCCACCTGCTGGGGGAACGCACCCACAACGTGACTGTCTTTGTCGACAAGATAGCCAAGGCAGAGAACTGTTACCACAAGGGACTGTCAGCCCTCAAGGCCGCGATGACCCCCAGTTGCCTCCTGACTTTCCCGTCCACCTATGTCCAGCTGCGCACTCGGACACTGCAGGCCTTCAGCCAGGTGGTCAAGGTCTGCTGCAGCTTCCAGACAAGTCCACCACCAGCCATAGCAACGTCTCTGGCGGTCAGCACCGGTCAAGAGATACACAAGTGTGGACACGTCATAGCCCAGCTGGAGAAATGTGGAGAAGAGTTTGACGAGCTCCACCTCAAGTACAGTGAACTGTACTGCAGTAGTTTTGATGCTGACACAGCCACTCTCTCTTCACTCACAATACTGCAGCGATCCTGTCAACTAATGACACATGTGCTTGAGACAATCCTCAAAGCCGTGCACAGGACGGAGGGAGCCATGGACCCCCCTGGACCAGTGTGTGGCAGTGACTCTCTTGTAGAGACCCAGACATGGCAGGAGGCGTTCAGTGAGGTGCAGCAGATGCTCCACAAGGCCTGTCACGCCCCCACAGACCTCCCTCTGTCCTACCACCATCTCAACTGCATTGAGGGTGTTGCCATGGTGCTGGGTCAAGTACCCCTCTGTCTGCCTCGCTACTTCTTCCAGAAACTACAATCAACTCACATCAAACTGGCGATCTCAGCCCAACAGAAGTCAGCCAACGAACCAATTTCTATAACACATGACACCTTCCTGACCCTCAAGGTCGAGGGGGTTATACAACATAGGGCACGGCCAGGTTTATATCGCAGCATTAAAAAGGTGCAGCTGACCGTGAATACAGAACAACAAAGTCGGACTCAGATGACTTCTGTTGATGGCAAACTTCACGAGAATCCAACGAACCACATGAGTCAGCAGGTGGAGCCACACAATGACTATTTCAGCACGCAGTTCCTGCTCACCTTTCCTGTCACTGGTGTCCACCAGGTGGCAGTTGAGGCAGCAGTGGTAGATGAGGACGATGCCGTGTGGATGACAGGACCACGTGACACAATCACAGTCAAGTCATATGACGAGGCGGTGCAGAGACAGAAACAACAGCAGTATGCTGCACAGCGCCAACAACAGAGGGCAGCAGCAGTTGCAGCAGCCTCTGGAAGTCTTTCTAATGTTTGTGGATGAAACAACTTGTAGCGGGTAACATTTACCGTGTTTCTGATGTTGTTTTAAGGTCCACACTGGTTAAATAACTGCTGATATCATGCATGTTATACCAATAAACGTGTTAGCAATTGTG

Protein

RPACG01000.1

MAEEQEEAVQVACTIKMKSIASFFKQPVTMVDKKTASKHSESTSSGPTEQTKGVKTASKHSESTSSDPTEQTKGVKTASKHSESTSSDPTEQTKGVKTASKHSESTSSDPTEQTKGVKTASKHSESTSSGPIEQTKGEKTASKHSESTRTGPTEQTKGENCQEENCQEENCQEENQNLDNGKQEQHPTNSLEIDSKGDLNSLNGNAQKSIKLDKKKAVVAKKQNTDTLNSSLDEFQTPKKPRLTKKRLQKPKKAKPVDKPGDPVLEENNGTILEISYEDFLRENTASENIYETATTVCETQKNDEDKSENLKNSPQRTSVIDDNVLQSPHIDKVSDKTPARKLQGRHCKVASEPPETRADDCDSTEDEKPKPSTANIRNYFTASRKGDVKRKSTNHSVVFVTAEVHSPPLGAEHKSFDIFTQTQKNCAGEDTEKDNKRESNSCARPVAMANTRKHNSNVCFESVDGDRTVTEFESPFGQENSRKPSPKVTHVSSKKEKVKMVSTKGNMTRKKVTETSGKNVAEVPGKKVTEFSEKKVTESSRKTVAESSGKKDTISSRNKVIRASGKKVTDSLKNKPKVKELFCTRKSNAGKDMSNKDMVVIDVTGDQDNAANTKTGMTKVATVTAEKETLEKRKSSAAVKIASLDCIEMPTRRSQTQMTLNYGCRKDESCVLQKLVMCDKNKKVTRRRCRRLDSEETLEETSDDDVMSVIDVARNRRKRRCHKKVSKCHDDNEHVAVCMTSGKSARGTVSEDVYESVFIESGCRRKKTPIKLKITRIAAKMSTDFTDPKKQQKLAKLSRAQQLLIKAKAKSKPTVCVSSKSNDNDDLRRSSRRSSMAAKSAIMLCYEEVVWKEQQNSDAAVKKSETPPSKRIREKSTSAQQKAKYSTISGRKTPSKTCSRKASPQMRMTLLPSRRKGSLSEGKTENSERGCRRERKLEEDLLRNDSRKISKTAKKSSIGKGKKKSDTAKLASIFQTSHVPKSGRTISLVVSDDSNDTKENSAERRQFLLSGVPQELQKRLVPTTEVDTANYPFWPLISHVRQAEIGSQQETAPDIVNVWNLPKVLLSMPLRKQDDTEVRTAQKWELGSFLEPWEKEVKQRHNKFEMKRENVSGLSSEAVSWLLAEVVTRNASYPAVRMYKHLMKRRLAAGIPSSAVATDKSSIDKKKEALTSGQQDNGGSNKRKLEHDSAGTGSGHRNKKSRSCQDHKGEYKGDHKGDHKGDHKGEYKGDHKGDHKGDHKGDHKGDHKGDHKGDHKGEYKGDYKGDHKGDHKRDHKHDRNGDSKRDHTGDITGKHDSQEKRSVESFRQKKDNRKRIRSKPTEEKEVIIMCDAESAGQETEKAESSTLWTDKYAPVNSIGILGNAGCVGKLKGWLKEWKTVTDRQARMEARERKKQQKKDRETKTAGKDDCDWWSDDDDFDMGDSRHGDSDSDGNELCNTMLVSGPHGVGKTSMVYAVAQELGYKVFEVNASSQRSGKQVLSQLQEATQSHQVSKKNLPDLMSVMSKTVVTPSCGKKEKKLPMAFSNLFAKAARLSKSDDVVITAVEKSGGKKEKVNEKKNTKCAKNEKSEKLRNKEKEGKKQKEGKTQEKGTSEASDCCKQALNLSSTSVILFEEVDIVFEEDKGFWAAIQMFIETTKRPIILTSTADQFVERFGSQAESLMLKTPSVMNTASHLQTIGLVENVRTDFSNVLSLVEYLRGDVRRCLLTLQFWLNSGGCSNPVPKDVVFDKKHYKSMAHLDGTVRDLQSEKVVKGKNHIKQNTDDCRTTVESVDGTRPKDTVINEDSSQSLDTFPPATKRPTLAVAHHADRKPDVALTPGVESECTKILAISAPLTHGRCFESILGPSVCCRGNCLQDGILQMLMDVGSSTSFIQGVKLVSDYRQQGVDLLYINLPLLLPSPPPSLPTPPSLPTSPSLPTPPSLLTPPSLPTPSSLPTPPSLPTPPYLPTPPSLPTPPSLPTPSSLPTPPSLPTPPSPEHVDKPRADVTKVPDITKTSDITKKLDDTETSDITEMSNIEKLDFTEMPDITETSDITEMSNITEMSNITEMTNITEMSDITKKLDITGSSDIAKTSTNGDKLYDCKNLDDIDNNRTFLSLTSKQSAVDKVVPPSRGCQGNKMCKRARELTQMSLSCIAEMHEDLSFLDSTFHVSPIRLTLNDDTRWPQHRCRTLPGLSDDIGDTEAEVTQNWWTDGCVEDMCAMLEMCSFKRTKETMTRILEDVNSLDDLDRHLVNDGLYVPVMKQHCDPRIQRDTEEEVRQSRSVRKAAENVSRCLPIGVQGHHRALSLDYVPYVRTICKLEQSREASHAKRRFLHYLDHHQMGLKSSSVSVLCASFT

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23389	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0061860	Molecular Function	DNA clamp unloader activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG01000.1 global RNA-seq network