Gene detail

Detailed information of RPACG00927.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00927.1	HISTIDINE TRIAD HIT PROTEIN MEMBER	tig00000298	727369	745300	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00927.1

ATGGCGGCCACCGAGTGGGGAAAGTTTCTAGTTGTCAATGTTTTATTGCTAATGCAAGTGTTCATCTGGGCTGAACAACCGTGTGAGCTAGCAAAAATCCACGTGCAAGGAGAAGACGGTAATCAACAAGTACTGACGATGAAACAGCTCAAGCCGACCCAGTGTGGGACATGCCGGCGAGGTGATGAAGCGTTGAGCTGTGGGGCAAATGTCGACGCGGCTGTCAGCCGGTTATCGGCTAGGACTGCGCCGAGAATACTAGACCTCGTACCAAGAGTGACCCTTGTTTTCGATGAGATCCTGATTGGCTGTGATGGACTGACAGATAAGGTTTCCGTTGAGTTGTGTACCAGGTCAAAACAATACAAGAATCAAGCAGCCAAGTCAGTTAACAAGGCAGGAAAACAACAAGTCACTAAAGATTTGTTCCAGCAATATTCAAAGGCCATTGTTGAGAACAGCTTGCTGCCGTTTATGTCACATCATAAAGACACAGACCTCGGTGTTGCATATGGTGTTGTACTCATGAGTATGGGATATACGGATGAATCCGTCGAACATTTCGCCAGACTCATAAAAGCTCAGAGAGGTCAAGGTCACAGTATAGTGTTGTACTATGCCAGAGGTATTGCTTACGCTCGCAAAGGCTTGCCGGAGAACGGTTTACTTGCCCTGGCTGATTTCTCCAAGGCTGTTGATTTGGATCCCACCAGAGCAGACAGCTATACAAAGAGAGCAGAGATATATCTGGCACTGGGTCAGTATGCGGAGGCACTTTCCGATATCAATAAGGCCATTGATATACAACCGGCTGGAAGACTTTATTTTCTCAAAGGCACAATTGAATTTGCCTTCGATGATCTGGCTGGAGCGGAACAGGATTTCCGGCAGACATTGATAGAGGGAAAGGAGGAATACCGAGTGGACGCACTGTACTATCTCGGGCTGACATTGTACTATCGCGGCAAAGTCAGGAATTCCATAGGCACATTTAAAGAGGCAATACAACATAAGAAAGACTACATTGAGGCCCACACTGGCCTTGGACAGGCCTACAGGGAATTGGGTGACTATGAAGAAGCCCTGCAGAATTTCAACGTGTCACTTTGCATGGATGGCGACCATCTTGTGACCTTGCGGCTGCGTGGCTCTGTGCACTATCATTCCGGAGAGACGCTGAAAGCACTGGAGGACTTCAATAAATGTTTATCAATAGACCCCAACAACAAGATTTGTCGTTACATGCAAGGGTTGTCACTCTCATCTCTGGGGCGATTCTATGAAGGCATCAAGAGTCAAACTAAGGTGATGGTCGACAATAACTGGCCATTGATGAAGATGATGCCTGAGTTTATCAAAGCACATTACCTGAGAGAATATTCACGGTATCTTCATCGTCATTTGGAAAGTACCGTATCAAGTGTTAGTCCAGACAGGGACCTGAATGGAGCATTCCGGGATCACTGGGCAAAGTTACTTCCGTTTACTTTTAAAGAAGGTTATCACGAGCAGCCAGGTATACAACCACAAATACCAGATGTGGCGCCCTCTATGTTTATGAATTACCGGCCGGAAGTACAGATGTTGGTATGTCGAGCGAGTCAGTTGGGAGATCTCACTCAAGTGTCCGTCGATGGTTTCCTTCCAAACAGTCGACTCAACCTTGCAATGGGGCTCGCCGTTATGCACATAGCACAAGTCATGGCGTCAGTCTGGCAAGATGGGCGGACTATGAAAAATGGAAACCAATTCAACTGGCGAGATATGTTTGATATCGCAGTACAGTATCGCCGCCTGGTGGACCTTGAACAAGCTGTTTTCTGGCTTGATTCGATGCCAGATGACAATGTAAAAGATGGATATACAAATGACATCCATTTTATTAAGGGTGACATCATGAATGTCAGACTGATCCAGTACTTTGAGCTGGTTTTTAAACTTGTGAAGACAATGGTTGATCACTACAGGGGAGAAGGTGTATTTAATTACCAAGAATTTAAAGAAGATCTGGAAAAAGTTCGATCATGTGAAGACCTCTTAAATGTTGCCAAGAACAGTCAGTTGAATCGACAAGGCTTCATGGTGTCTACACAAGTACCCAGCATGAAGGACAAGACAGTGCGTCATGAAGGCGTCATTCTCAGTCTCACCGGGGACTTAAATGGGAAACTTCTATTTGCTATCAACCTGGCTACAACAAAGACACGTACAAAGTCTTACCACTCAGAGCTTGACTTCATGTTCAACAAACTCTACCAGGAAATACAGAAGACAGGCGTCAGCCAGATTGTGGACATAGACAACGTGCTCAACACGATCCTGTCCCTCGTTTACTACTTCTACAACCTGATGCCCCTAACACGGGGCTCCAGCGTCGTCGCTTACTCTGTTGTCATGGGACTCATTCTGTCCCTGGGCTGGGAGGTGCAGGGCAAGATTCCCACCGGAAAGCTGTTGGACATAGAAGCGATGTTATCCGGGGCACCAGATGCCTTTGTCATGGTTCACAAACAGTGGATCAATGTTAAACGGAGTGACAAACCTCTGTCTTCTCTGATCAAGGTGAAAGACGCCTTCCCTACTGTACGCAGTGTCTTTGAACTACTCAGTCTCAGCTCGCAATCTATTATTTGTACAATGAATTAA

Transcript

RPACG00927.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05652	DcpS	Scavenger mRNA decapping enzyme (DcpS) N-terminal	Family	Interproscan
PF11969	DcpS_C	Scavenger mRNA decapping enzyme C-term binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008594	Family	Scavenger mRNA decapping enzyme DcpS/DCS2	Interproscan
IPR011145	Homologous_superfamily	Scavenger mRNA decapping enzyme, N-terminal	Interproscan
IPR036265	Homologous_superfamily	HIT-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12978	HISTIDINE TRIAD HIT PROTEIN MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000290	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000340	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0050072	Molecular Function	obsolete m7G(5')pppN diphosphatase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00927.1 global RNA-seq network