Gene detail

Detailed information of RPACG00911.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00911.1	ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2	tig00000298	485118	496661	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00911.1

Transcript

RPACG00911.1

ATGTTCTTGCTCATGTCCGGGTTACCTCAGGGCACTGTACTGGGTACATTCCGGTGTATCTCAAGGCACTCTACTAGGCCCTGTCCGGAGTACCTCTGGGCACTATCCTGGGCTAAGGCCCAGGCCAAGTCCTGGGTACCTCAGGGCATTGTACCGGGTGCTGTTCGGGGTATCTCAGGGCATTGTACCGGGTGCTGTCCGGGGTACCTCAGGGCATTGTACTGGGTGCTGTCCGGGGTACCTCAGGGCATTGTACCGGGTGCTGTCCGGGGTACCTCAGGGCATTGTACCGGGTGCTGTCCGGTGTACCTCAGGGCATTGTACCGGGTGCTGTCCGGGGTACCTCAGGGCTTTGTACTAGGCCAAGTCCTGGGTACCTCAGGTGACTCTACAGTGTCCAGTCTGGGGTACCTCTGCGTAATGGGCTGGGTCCAGTCCGGGGTACCTAAGGCACTGTGCTGGATCCATTCCGGTTTACCTCAGGGCACTGTTCAGAGTCGTCTTATCCACAAAATGACGTACGTGAACCCAATCAGCGCGCTACCGAAAGACAGCGGATGGTCGTGGATGTGCCTGATCGGGGGTCTCTTGATGAACATGATCGCAGACGGTGGTGTCTTCAAGTCGTTTGGCGTCATATTTTCACACGTTCAAGCAAAATACGATGTTTCCGCAGCTTTCTTGTCGTGGATTCCGTCATGCACCGTTGGACTTGCTTTGATTATTGGTCCGCTGTCCAACACTCTAGCGAGTCGTTTCTCCACTCGCCGCGTCGTCATCACCGGATCAGTGCTCGCTATGGCCGGCTACGTACTCAGCTCGTTCGCCGGAAGTGCCTGGCTGTTCTTCTTCACCTACGGCATAGTCATCGGAGTCGGAGTTGGACTCCAATTTGGGCCCAGTATCGTCGTCGTCAACCATTACTTCGAAAAAAAACGGGGCCTTGCCAACGGCGTATCCCTTGCTGGGAGCGGAATAGGATCAATGGCGATCCCGCCTATCATGGTGTACACCCTGCACTCGTACGGCGTCGAAGGCACTTTGCTTATAATGGGCGGTATCGCACTCAATGTGTGTATTTCCGGCATGCTGTTTCGACCGGCAACGTTCTACTTGAAGAGACACCTCCTACAAATGGCGAGATGCCACAGGATGAGCACGGTAGCACTGCATGCTGGGACGAAGCAGCCATCAGACGACATGACAGGAGAAGTGATTGCAGATGCATCTGCCGGCGAACACGTTAATCCGATTTGTTCAAAGGACATACATTTCGATGAGACGGTCATTAATACCCAGCGATGCCGGCAAAGTGCAGATTCGTCGCATTCGAAAGGAAGAGATTTTGGAGAAAACGATAACGGAAAGGAATCACGAGAGGAAGGTAAGGAATGGCGTATGGAGGCGGATCGCCATTCCGCTGGACGACGCCAACCAGCAAACGATACAAAGGTTCACGACAAAGATGACACGACAACAGGGCAAATAAGCCGCAACGAGATTTCTACAAATAGCTCAACAAAGGATGACTCCCAAAACGTGCGCGTCAATGTCATAGACGTGGAATCTCACTCAAATGACACCATTCATAATGCTGGTACATCGTGTTGCTGCGAGACAAAGCCTCTACATAAACCATCCGTTTTCGAATTTCGACTTCTCATCAATCCGATTCTCCTTATTTATTGTACGACTTTTGCGGCGGCCGGCAGCATTTATTTCAACATGTTCATCATGGCAACTCCGCACACGGAACAGTTGGGCTTCACACACACCAATGCGGCGATGCTCGTCTCTATCATGGGTGTGGCAGACACGATATCGCGTGTCGTTTTCGGAACCCTCGCCGACTTCAAAATCATTAATACGCAACACATGTTTCATGCGTCTTTGGCTCTGAGCACAGTCGTTCTGTTTGCGTTACCGTCACTGAAAACATACGTCGCCATAGCGATTGCTTGTGTGTTGTTTGCCGTCGCCGGCGGAGGATATGTCTCACTTATTGGAACGCTGCTGGCCGAGGTAATGGGAGTAGAACACTTACCAACTACATTCGGAGTGTTGACTTTCGCAGTTGGGTGTATAGCTTTTGTCACGCCGGTAATCACGGGTAAGCTGCGTGACGTGACGGGAACGTGGGACACGTCATTCTACACCTGTGGAGGAATAATGGCGGCCGTAACATTCCTCAACCTGTTGATGCCTCTCGCGACAAAAACGGGACTACGAATGCTGAAAAGAAAATGACGTTCGCAGTGTACTGATAAAAAGGGCTGTTGCGTAGCAATTAGAGAGTCGCACACTTTGTTGATACATTCCTCTTTCAAGGACGTTGGCTTGCTTCGCTGTCTACTTCACCTTGTAAGCCGCGCAGAAATCTGTTTCTGCATTATTGTACACGCGCACGAACTTTCTAACTGTATTAAACTATCTTCTTATATGCGACGAAGAACGTTTGATATAGTGGATACTTGAAATAACAAAGACACAATGTTTTACTCGTTGGTCATGTATTAAACCCTGACAATTTGCAGGCGATCTAAGAAGAAATGGAAATGATGACAATACCACAAACACACATACACGCACACGCACTGTAAAGCAAAATAAGCATTTATCAAATCCAGTATATTCGAGTATTAAAATTAGACGAATTTGGACATTCAGGAGAAACGACATTCAAAAGACAACAGCACAAACCTATATAGAAAGACGTTAAACACAACGATAGGAAAAAGTTACAGGAAAAGGATTTGGCATCGATGTTGCTCTCACAATAAAGTGTATTGCAAACATTGAGCTGCACTATTTTTAAAGACAAGTGGGTCCAACATGGGGGTCCAACAGCCAACTCTAGACAGATGCTTTAACAATCCGATCAGATATCTACCTTAATGGATACCAAACAATTCAAATGAGAGAGCACTGGGCCAGCAACGATAGGCAACATTCTAGTTATAGCAGTGAAGCAATGACACAAAAAGATGATGACAGTTCTGATCGCGAAACAAAACATGGGTGAGGTGTACATGTGAGTTTTCACAGAAGTTCAATTACACAATGAGTAGAAACGATTTCGTCGAAATCAAATATTATCTTAATCACTTGAAAGTTCTGAATTTGAGAACGAACAGTCAATGCAGTTGCTACAGAAGCAACAATTATGTCAACAAATAGCGGTGGAGAAAGTTGGAAATGTATTTTAGCAGACGGTAGAATGAAGGGAGGATGTTAGAGATCTTGGACGAGAGGATAGGAAAGTAAGGGAATAGGAGAGAGAAACATGCAAGCAATCACATGATATCTCAGACCGTCAGTTAGTCAGGAAGGACAAAACAGCGTTGACCGAAGCACAGTTAACCCCAGATTCAATGCAAACGACTTACCGATCAGGCACATCCACGACCATCCGCTGTCTTTCGGTAGCGCGCTGATTGGGTTCACGTACGTCATTTTGTGGATAAGACGACTCTGTCAGGTCAGTGAAAAACAAAATCGATTACACAAGTGTCTTGCCGTTCATATGCAGATGTCGTTTTCACCGATGTATGTGTGTTCGCATGCGCATGCGCATAAACCACATAACACACGTAATTAAAGGATCAACTCTTTGCACATGGTCACAACAATGTTAACATAGCGTACGGGTTCACATTAAAAGGACGTTCTGGGTCGCCGAATCCAGATAGACGCTGTTCCTAATGCTCACTCACACAAAGAACACTCGGCCTCGTGTGCTGGCTATTGGAAATAGGTTTTCAAAGCCGGGTATGTATAGACACATTCTTTGTAATCTAATTATCTTGCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF00640	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF16746	BAR_3	BAR domain of APPL family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR004148	Domain	BAR domain	Interproscan
IPR006020	Domain	PTB/PI domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR047181	Family	DCC-interacting protein 13-alpha/beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46415	ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010008	Cellular Component	endosome membrane	Interproscan
GO:0023052	Biological Process	signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00911.1 global RNA-seq network