Gene detail

Detailed information of RPACG00860.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00860.1	FTP DOMAIN-CONTAINING PROTEIN	tig00000162	4903938	4920715	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00860.1

ATGAGACCAAAGAAAAGAGACCAACAGGTTTTGGAAGAGCCAAAATCACAGGTGGATCAAGCACAAGCAGACCACGAACTGTTCCTACAAGCTTTTGAAAAGCCAACACAGATTTACCGGTACCTGCGTACAAGGAACTTGATATCGCCAATATTTCTACACCGTTCCCTGAGTTACATGAGAGAAAGATGTTCAAGAAAGGCAAACACCAGAGACAACTTTAAAGTGGATGACATCCTGAAGAGAGTACAAAGTGAATGCAAAAAAGACCTGCAAGATGACAGTTACAAATCTCAGTACATGAATCTGATGTTCACTGGCTTCTTTGATGAAGGAAATGACAGCACAAAAAGTGTGGATGTTGAAACTATACTGAAGAAGGTTAGCCACAAGAAACGGAAGGACGCAACGTCGCCAGTAACAGACACAGTTGTCGGAAAAGTTCCGGTTGCTTATAATCCTGTGGGATCAACATCGACCAATGGGGAGGTTGTATCTGTGAGCGGGGACAGGTTCCAACACAGTCATGGTACAGCAGTCAGGTCATATGAGCTTCTCATACGTGTCACACGGAAATATTTCCGCTCTGTCATTGTGTCACAACCTCTCTGCAACGGCACATGTGACTCTGATGACGCAGACGTAGATGTTCGTCCACTGAAGCGTCGCCGTAGCAATCGTATCTCGGACGAGGATCATGAGGAGGAACTGGCATCGCCCCCAGCGACCAAGCGAGAGGAAATGACCAGTGTGTACACTGCCCAGTTGGTAGTGTATGACCAACACCTACACCGGCTGCTCACAGATGGGGACTACGAAGTGGTCCTGCAGGAACAGTGTGATCATGTGACCAGTGGGGGGAAATCCAGGGCATCATGGGAAGCAATATCCAGTCACTGCGATTCAAGTGCGTTTGAGGTGTTCCACAAGTGTCCCACGCTCAAGTTCCGTCTGGCGTGGGGACCGACTGCATTGCAGAGTGACGATGACTGCACAGCCTTGTTTCCCGCGAGTAGAGACAACCACATTGATCAACTGGACCTTGTCAATAACCACATTACCAGTGACCGTATGAACGGTCGCCGTGACCACCCGTTGTCTTTGTCCGCGGAGCGGTGCACCGCTGGCAGTGGCTGCACCACCAGTGCGAGGGACGGTGCGCGGCGCAAGCGTGTGTTCTACCAGTTCCTGTATAACAAGAACACGCGGAGACAGACGGAAGCACGAGACAACATCCAGTGTCCGTGGTGTGGCATCGACTGTAGACAGCTGTACCCTCTCATGAGACATCTACGGTCCTGTCACCCACGGTTCAACTTCACCTATGCAGTACGCCTGAACGAACACCAGAAAGGAGCTAGAATTGATGTGTCGGTGAATGAGTCCTATGATGGGTCGTACGCCGGCAACCCTCAAGACATCCGCTCCTACATTGGTTATGCCTTCAGTCGTAACGGGCCAGTCCGCCGGACACCGGTCACTTACATATTTGTCTACAAACCACAGAGAAGTAGCAGTAGGGGCGATATGTACGAGTTCGCAGACGAGGAGAGCGAAGCTCCAGCCACAAGACAGATCATGCAGGGTCATGACAGGCTGTACTACCATCCTGTGACGTGTCAGCCAGTTCGGCCTTGTGAGATAGAGGTCGCTAGCATAGACAAGAACGACCCAGAATGGTTGCGACAGAAGACCATACACCTGTTGGAAGACTTCACGGACGTGAACGAGGGAGAGAAGGAAGTGATGAAGATGTGGAACCTCCACGTCATGAACCACAACTTCATTGGTGACTGTTCCCTGCCCAAGGCTTGTGCGACTTTCATCCAGGAGTACGGCGAGGCAATCATCCACAAGAACCTCTTTCACAACTTCCTCCTTCACGTTGTCAACTTACTTGACTTTGGCCTCGTTCGCCCCGACACCGTTACACGGACCATGATGCAGTTGTACTGGCTGCAACATCGCCTCGAGCCGCAGCCTTTGGGGAATCCCGACGTAAAACCACAAGTGAACGACATCAGCGAGTCATCAGCCTGCTCAGACAATTCATAG

Transcript

RPACG00860.1

CTTTGTTGTCGGGAATGTTGTATTTAGCGCGTGTTTAAACGAGCTAAGGGTTTAGTTAACACAAACGACCCGAATATGAGACCAAAGAAAAGAGACCAACAGGTTTTGGAAGAGCCAAAATCACAGGTGGATCAAGCACAAGCAGACCACGAACTGTTCCTACAAGCTTTTGAAAAGCCAACACAGATTTACCGGTACCTGCGTACAAGGAACTTGATATCGCCAATATTTCTACACCGTTCCCTGAGTTACATGAGAGAAAGATGTTCAAGAAAGGCAAACACCAGAGACAACTTTAAAGTGGATGACATCCTGAAGAGAGTACAAAGTGAATGCAAAAAAGACCTGCAAGATGACAGTTACAAATCTCAGTACATGAATCTGATGTTCACTGGCTTCTTTGATGAAGGAAATGACAGCACAAAAAGTGTGGATGTTGAAACTATACTGAAGAAGGTTAGCCACAAGAAACGGAAGGACGCAACGTCGCCAGTAACAGACACAGTTGTCGGAAAAGTTCCGGTTGCTTATAATCCTGTGGGATCAACATCGACCAATGGGGAGGTTGTATCTGTGAGCGGGGACAGGTTCCAACACAGTCATGGTACAGCAGTCAGGTCATATGAGCTTCTCATACGTGTCACACGGAAATATTTCCGCTCTGTCATTGTGTCACAACCTCTCTGCAACGGCACATGTGACTCTGATGACGCAGACGTAGATGTTCGTCCACTGAAGCGTCGCCGTAGCAATCGTATCTCGGACGAGGATCATGAGGAGGAACTGGCATCGCCCCCAGCGACCAAGCGAGAGGAAATGACCAGTGTGTACACTGCCCAGTTGGTAGTGTATGACCAACACCTACACCGGCTGCTCACAGATGGGGACTACGAAGTGGTCCTGCAGGAACAGTGTGATCATGTGACCAGTGGGGGGAAATCCAGGGCATCATGGGAAGCAATATCCAGTCACTGCGATTCAAGTGCGTTTGAGGTGTTCCACAAGTGTCCCACGCTCAAGTTCCGTCTGGCGTGGGGACCGACTGCATTGCAGAGTGACGATGACTGCACAGCCTTGTTTCCCGCGAGTAGAGACAACCACATTGATCAACTGGACCTTGTCAATAACCACATTACCAGTGACCGTATGAACGGTCGCCGTGACCACCCGTTGTCTTTGTCCGCGGAGCGGTGCACCGCTGGCAGTGGCTGCACCACCAGTGCGAGGGACGGTGCGCGGCGCAAGCGTGTGTTCTACCAGTTCCTGTATAACAAGAACACGCGGAGACAGACGGAAGCACGAGACAACATCCAGTGTCCGTGGTGTGGCATCGACTGTAGACAGCTGTACCCTCTCATGAGACATCTACGGTCCTGTCACCCACGGTTCAACTTCACCTATGCAGTACGCCTGAACGAACACCAGAAAGGAGCTAGAATTGATGTGTCGGTGAATGAGTCCTATGATGGGTCGTACGCCGGCAACCCTCAAGACATCCGCTCCTACATTGGTTATGCCTTCAGTCGTAACGGGCCAGTCCGCCGGACACCGGTCACTTACATATTTGTCTACAAACCACAGAGAAGTAGCAGTAGGGGCGATATGTACGAGTTCGCAGACGAGGAGAGCGAAGCTCCAGCCACAAGACAGATCATGCAGGGTCATGACAGGCTGTACTACCATCCTGTGACGTGTCAGCCAGTTCGGCCTTGTGAGATAGAGGTCGCTAGCATAGACAAGAACGACCCAGAATGGTTGCGACAGAAGACCATACACCTGTTGGAAGACTTCACGGACGTGAACGAGGGAGAGAAGGAAGTGATGAAGATGTGGAACCTCCACGTCATGAACCACAACTTCATTGGTGACTGTTCCCTGCCCAAGGCTTGTGCGACTTTCATCCAGGAGTACGGCGAGGCAATCATCCACAAGAACCTCTTTCACAACTTCCTCCTTCACGTTGTCAACTTACTTGACTTTGGCCTCGTTCGCCCCGACACCGTTACACGGACCATGATGCAGTTGTACTGGCTGCAACATCGCCTCGAGCCGCAGCCTTTGGGGAATCCCGACGTAAAACCACAAGTGAACGACATCAGCGAGTCATCAGCCTGCTCAGACAATTCATAGCAGTCATGTGTGTTGGCATGACGATTGTGGCCATGGCGATCTAGCACAAGAACGTAATTATATTTTGTGCTTCATGCTGCAGCTAGTAATTTTAGTCACTTCTAAAATAAAGATTTTCTATGCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR051941	Family	Blood Group Antigen-Binding Lectin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45713	FTP DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00860.1 global RNA-seq network