Gene detail

Detailed information of RPACG00673.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00673.1	TRANSLOCATION PROTEIN SEC62	tig00000162	1455389	1464940	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG00673.1

ATGGCGTCAAACATGTCCAAAGTGGAAACGGAGGGGCATACAAATGCGTACATTAGGATGATGGGTGAAGATCTGCTACAGACTTCTCGCAGCTCCAGTCCTGCATTGAATGATACAAAGTCATCACCAAAACTACGACGCAAGGATGATAAAGAACTGCCTGATGTGAAAGAAAGATTGGCCCAGCTGCGGCCATCACGAGAACTTCTGGAGTACTATCGGAAGAAGATCTCAGAGTTTGACAGTGAGCATGGTGAGATGTTGCAGAAATTAGACAACTACCGGACAACATACGAGGAACAGCTGAAGCTTCAGTGGCAGCTGCGGCAGCGGGAGGATGAAATCTCAGAGCTACAGAAAGCTCTCAGTGACATGCAGGTGTATCTCTTCCAAGAGAGAGAACACGTTCTGCGATTGTATGCTGAGAATGACAGACTCAAGATTCGTGAGTTGGAGGATCGCAAGAAGATCAACAAGTTGCTGTCGATAAGTGGACTGACAGAGAGCGAAGTGTCCTACTTTCTGAAGGAGCCACCAGCTGTCGCCGTGGTGCAACAGCAGCTTCCTAAGAAACTACAGAATGAACTCGCTAATAAACACAACCAAAACCAGCTCTCATCGGCCACTGGGATGTGTTGGTGTAAACGACTCGGCAAGAAGGAGCGCGACGCCATCGCAGCCGGTGAACAGCAGTATCGCCATGACAACCAGACACTCTCCCTGCAGGTGGAGGCACTGCAGGCCCAGCTAGAGGAGCAGACACGGCTGTCTCGAGAACAGTTAGAGGCAATGTTTGAGGACCGTCGTGTGAAGCAGGAGGAATCAGATGGTCGCAAACAGCGGGACACAGACAAGATCCAGGTCCTCACAAAGAAACTCCACAAGACACAGGAGTTGCTGTACGACAGCACGAAGGACTACCTGCAACAGCGCTATGACCACAGGAACAAGGAGCGCGTGTGGATCCACGACAAGGACAGATTGCTGCTGGAGCTCGACCAGTGTCGCTCGCAGCTCAACCTCACTACGGACGACGTCTTGAGACTGTCAGTGGCTGACTCGCAGGAGAATCTGAGCGAGGAGGTTGAGGTTCTGACAGGAGAGAAGCGCCAGGCCCAGAAGTTAGCTGACATGTACAGAGAGCAAGTGATCCAACTTGAGGACAAGTTGGCCTGCATCCGCGAGGAGGAGACAGTCGGCAAGGAGCTATTTAAGGCACGCACTCACAAGATGGCGAAACGACTTGAGTTGATGAACCAACGGTATCAAGATCTGGAACGGCGGCGCAACCTGGAAGTGGAAGGGTTCAAGACGGACATCAAGACACTGAGACAGAGGCTCAAAGACATGGAAAAGCAGCTGTACAAGGTGACGATAGGACTGACGTGTGACCGGGAGGAGGAGAGACCGGACGATATCGACATGCAGGTGTTACGCAACGTGCGTCGCACGGCTGGCCGCTCACAACATCTCATGGGGGAACTGAAGACACTCAAGTCCAAGGTCTACGGCCTCGAGAACGACTTACGACACTTATAACACTGTCCTTGCAATGGCCATGGCTACATCCTAACTGGAGGGGTGCATGATCTCTACAGGGTCACTGGGTAGATGAATGCTTTCATTGTACAGGTTAATGCCCTCCCCGGAGGGGTGAACCCTCTCAGTGGAGCAGTAGTCATTTACTGGTGGATGCCCTTAATGAAAGGGTGACAATTCTTAATAGTTAACATTTTCACAGAGGAGGTAACACCCCACCCCCTACCCCCACTCCTGCTGGGAGGGAACATTGGCAGAGGGGTAAATGGCCTAGCAGTTCAGTCGTAACGATGTGCCAAAGACAGTTGTTGAATCCTATGTCCATTCCTTACGCTTGTTTAGATATAAAAGGTAGCCACTGAAACTGGGGGAAATATTTGTTTGGTAAACTGCCACAAGTATAACCTGTAATGGTTAAATGTCACAATTGCCGTGTTTTTCAAGAAACTATCCAAAATAGGAATATATGACAAATTGTTATGTAAATTTTGTTTTTAATCTCGTGCAAATCACAGAAAATGGGCTACATGTTCAGTCAATCTTCAGTGAAAAGAAACAATAACAGAAGTTCTTACAGTTATAGATGTGATGTTTGCAGTGAGTAAAATTGGGAGCTAGGTACACAAAATATTTTTACTATATATTGAAAATGTGATATGTATATTTATAAGTGAAAAAGATAGATTTTATATCATGTAGACTAATGTAATTATCAAGGAAAAGCAAGTTCGGTTCTCATTAATTGCTGGTGATGGGAACCCTTTGTTGCCCGGGGCAGTTAACAACCGTCAAATATGTATATAATATATTATTGCTGCATGTATATATCTTGTCTTAGCACAGCACAAAATAGCATATTTCAAATGTATGTGACATAGCGGAGTATTTGTGAATAAATTTCTTACACAAATATGGTACTTTTTGTTATTAAAGTGTGATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03839	Sec62	Translocation protein Sec62	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004728	Family	Translocation protein Sec62	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12443	TRANSLOCATION PROTEIN SEC62	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031204	Biological Process	post-translational protein targeting to membrane, translocation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00673.1 global RNA-seq network