Gene detail

Detailed information of RPACG00497.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00497.1	DNA REPAIR/RNA PROCESSING CPSF FAMILY	tig00000002	6654744	6702208	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00497.1

Transcript

RPACG00497.1

ATGTCACCAGATACTGAGGTGGTATCACCCTGTCTGCAATCACCCGGCTGGCCGCTGTGTCATCATAACCGGATTATTATACATTTAAATTGGCCGTTGTCACATCGGTGCAGAGAAGGCAATGGGACATGTCTGTGTATGACATTGTCCACTGCAGGAGTCGTACAACTGATGTGTGGTCAGATGACAGAGGGCTCGTTGCGTGAGTCCGTTGTACCAGAGGGTGAATACCAGCAGCTAGTGACAATGGCGATGAAGCGCCCCGTACCTTGGAGGGAGATGACCCACCTCATGGAGTATCTCTCCCAGTGTCTATGCGAGGCTGAGCACAGTGTAGCCGGGATCACCCTCGACAAGGTCACGTTGTCCGTGTACGGTTGCCAAGGCGATGCGGAGGACCATGTGGATATCCGACCTCGCCTCTTGCCCACGTTCCAGGCACATCACTCATCATCTGGTCGCCATGGTAATGAGATGATGTGCACTGAACAAGAAGCGAAGATGGTTCACCGTGTGCTACCAGATGGCAGAATGGTGAAGGAGGAACCGCCACCGAACTGGTCCGTTCTTGACATACCTGCGTGTGTGTATGACGTCGCGAGCAATGTATTACAGTCGGGGGTTGCAATATTACCAGGTGGGGAGGACACTGAAGGAAGTGCCGTTGTAATAGTGATGTGTCAACATCCAGCATGGCAGGAGATCCCTGTGTCCAGTGAGGAACTTGCAAGACTACTCCTCTATTTCCATCAGACACTCCAGGAGGTTGATGTCGGCGATGGTGACACTGGTGACACTAGCAGCATTACAGTGATAATTGATGCGAGAGGAACGACGCTGCCGGTGCTCAATATTCTTCTTGAGGCCCTTTACATTGTGAAGGCGAGCCAAGCCACAGCCGTACAGATTGTCCATGTTCTCGCGGATCGTGTTGCCCAGTCACTGCTGTTCAAGAGCTCAGTCTTCAGACCTCAGGTCGACCTGAAGATCAACCTACTGATGAGCATAGATGCCTTGTACAAGTTTGTGGAGAGGAGCCAGCTGCCTGTCTCGTTGGGGGGTACTTGTCAATACAGTCACAATGACTGGCTCCAGGACAGACAGACATTTGAGGAATTCTTGCTGCGGTGCAGGACTGCTGCGAGCCACCTGGTGGCGGCGACGCAAGAAGTGGTTGGGGTGGAAGTGTGGCCAGGCAATGTGGAGGAAGCAGAGAGGCTCATCAACGAGCACAAGAACTTCGTGGAGAACGTCTTCACAGAGCGTGCCCTAGTGGAACTGGAGAAAAACAGTGAGCATATAGCACACATGCTGGCGAACTGCAACAGCAATGAGCGGAACAGGGTGGCGGCTGCAACTGGCCGCAGACTATTGCTGGACGTCCAGCAGGCTGTGTACAGGCTGATGAAACTCTCAGATGAACGACTTGATAAACTCGAGCAACATTTGCAGCTACGGCAATATGAACAGCAGTCTAACGAGGTGATCAGTTGGCTGTGTTGCGAGGGGGAGGAGATCCTCACAAAGCACTCGTCCCAGGCCGACAACTTGCAGGCCATCCACACCCAGAGGGAGGACCTCCATCGCCTCTATCTCTCAGCACTGACACACCTAGACAAAGGTCGTGACCTTCTGGAGGAGGCAGAGATGTTATCTCAGGATGGTCCCTTCGATCAGGTCACCGGCATCAAGGAGATTGCTCGTGAACTTAGAAGTCGCATGAAACATTTCACCTCCAATCTGGAAGAGCTGCGAGACAAAGTTGAGGACACAGAGCAATGCTACGAACTCCTCGACAAAACATATGAATGGGCACTTGATGCGATGAAGTACGTAGCCAGTATGAAGCTGGACAAAACAATGAGTATGCCAGAAATCAGCGAGCTGTGTGTGAGTCTGGACGAGTACATGAAGGAGCATCCAACAGTGGCTGACGATGCATTTCGCATGATGCAGAGTCTCGCAGAGAAGCTACAAAATGATAAGCTGTCAGAGAAATGTGCAATGGCCAAGTTGCGCTGTCTTGAAACTGACAAACTGCTCCGGGTTCGAAGGTCAAAACTACATAAAGCCAGCCAACATCTGACTGAGGAAAAGCAACCAAAATCGAACAATAACAATAACTACCAATGCATGGTGACATTTCACAATGGCGACAGTCAGAATGCATCGCAGTCACTGACTAGGAATGCTAACTACGGGGAGCCCCCTAGTGTTGTGATTAGGAGACGTTCCTATGCGGGCAAGGCAGCTTCACCTGTGTACAATCCATTGGCAGACGCATACAGAGAGAGTGTCAAAGACCTGCGGATACAGGAGCAGTTCTTTAGGGACTCCGTCATCACAGTTGACATGTCATGTCACGTTGTCACGTCATTGCCCAAGAACTTGTCCGACTCGACACTTCGGGGTTCTCGTGAGAGTCTGAGGGACTCGAGTGAGAACCTCACAGAGTCTCACACCAATGAACAGAATGGTGCGTCACTGCCTCCAAATATGTCACGGACTGTTGAACCTTGTTCTTGCAACCAGGCAACCTCAGTACAGAGTAGAGGGTCTGCCTCAAGCATACAGAGGAGGAGGGGGGTGCAGGAGGAGGGCATTGACAGGAGGGTAAATAGGAGGAGTACAAAGACATTCAGTATGATGACGGGAAGCTCCGAGAGTTTGCCAGGAATCCCTGATGTGGTGTGGGAGGAGGAGAAGGATGAAGGCTGCCTCCAGGAGGACAGTCTCCGGAGGGAGGTGTGGTCCCCGGTCCCCGTCAACTCCCACCTTCTGTCCCGTCACAATACCGAGCCAATGTACCAGTCCATGGCTGACCTGCGTGTCGCAGCGGAGGACATCAAGAGACGCAAGAACCTAGCACTTGTGATGAATGAGATGATCCAGACAGAGCGAGACTACGTCAGATCTCTACAGTTCGTCATCAACCATTATATCCCCGAGTTGTCGCGTGACGATGTCCCCCCAGCACTGCGGGGAAAGCGCAACCTGCTATTTGGAAATATCGAGAAGATCTATGAGTTCAACAGTCGCTACTTCATGGCAGAACTGGAGGCCTGTGCCAAGAATGCCTTCCAAGTGGCACACTGCTTCCTACGCCATGAATCTCAGTTCTACCTGTATGCTCTCTACAACAAGAACAAGCCAAAGTCTGACCTGCTCATGATGGAGTACGGCTCATTCTTCAAGGAGAAGCAGAGTGAGTTGGGAGACCGCATGGACCTCTCCAGCTACCTGCTCAAGCCTGTCCAGCGGATGGGCAAGTACGTCCTGCTGCTTAAGCAGATCATCAAGGAGTGTCCTGAAACCGAGCCAGAGTATCGTGACCTCAGGTTTGCCCTGGAGATGGCCAATTTCCAGTTACGTCATGGCAACGACCTACTTGCAATGGATTCACTTACAGGATACGATTTGAACCTGCAGGAGCAGGGCATGCTGCTGCGTCAGGGAGAGTTCGTTGTGTGGCATGGACGCAAGAAGTGTATGCGACACTTGTTTCTCTTCGAGGAGATGATTGTCTTCAGCAAGACGAAGAGAAGCAGCACAGGTCACGACATCTACATTTACAAGAACAGCATCAAGACATCAGACCTAGGACTGACAGAGAGTGTTGGTGACAGTTTTCTCAAGTTTGAGCTGTGGTTTCGGCGGCGGCGGCTTGGAGACATGTTCGTCCTTCAAGGATTTACTCCAGAACAGAAGACAATCTGGGTGCAGGATATTTCACGGTTGCTATGGAAACAAGCAATCAAGAACAGAGGCCTTCACCTATCTGAAATGGCTCAGATGGGCATCGGTAGTAAGCCCTGCGTTGATCTCAAACCCAGCAAGGACAACATCAGTGACAGATACATTGACATTTCCAAAATTCCAAGGGTACGCAACTCAATTGCAGTGTCGTCGTTTGAACACCTGAAGGGTGGCAACAAACGCCCTCATTCCATCATCTCCATCAGCAGCTGCAGTTCGTCCTCGAGTAGCAACCCTTCATCTGGCTACTCCGCCTTTGCACCTCTCTCCATGATGGTTGAGTCACCCTTCGAAACAACCGTTCGTTCCAGCTGCACTCTCACATCAAATGAGAGTGGCATTGTGACAGACATGAGCAGTGCTTCCAGTCCTGTGGATGCTTGCACACAAACAACACTAAAGCGGCCTCAGAAACGACAAGACGATGCCCCTAGTGGCAGTGATGGCATCCAGAACTGCGTCGTGCTGTCAGTTCCATCGACAGAGGCTGTAGGCACAGATGTATGACAGAGAAGACTTGGCTGCCACAGCCAACTTTGTGTTTGACAAGTTTTCCCCAAATGACACGACACAACACCCATCCACTATGGAAGGTGTCAGATGGCTTCCATGTGTTGGACAGCTTTCAAATGTTGGATGTCTTCCAAATGTCGGATGGATTGCAAGTGGTGCATGGCTTGCAAATGCTGGATGGGTTCCAGCAGCAACACTTGGGCTACATTCCACATTGTGTACATTTCGTTTCGTAGCCAGGCAAGTGGTCTTGGTCCAGTGATATCCATTCATGGTCCACTGACCTGTGATCACAGTTCACTGACCTGTGTTCTTGGTCATTGACCATCCATGCTGTGTCAGCCATGTACATTATCACACCTGTGCCATATTGTAGATAGATTAATCATTCAGCTGTTAAGATAAACTGCATGTGTTGTTTGTTAATAATTCAACCACTAGATGGTATGTCAAATTTGCTGTCGTTTCGTTTACCATGTGCTCTTTCTACCCAATTTTGTACCAGAATTAATGATCTAATATGCATGTATGATGATATAATTTGTTATTTGATAAAGGTGATTATTTTTATGGTTTTTTTCAAAGCAATCAAACCAGATGGGGCTTCAAAAATGTAATTGATATATTATTTTATGTTAAGAAAAATTATCTATGTTGATTTACATATGTTAATACAAATACATTTGTCAATAATCACACAAAAATCAGGTTAATGATAAGTATACATACCACCCTGAGAAAATGGGCAACATGGTCAGCCTAACGTTTGCTGTGGTCGATTCCGGTCTTATGGGATACTGAAACACTAAATTATTATTGATAACATCTCAATACATGAAAATAATATTCACTATTTTCACATTGTTATTTAATATGTAGACTGAACAGCTCATAGTATGTTGGCATTATAATTAACTGACGTAGTTAATTTTCAGTTACCCAATCAAAACCGTGCATCCTTTTAGACTTGTACATAGCATTATCAGTAGATTTATGTAATCATGTAACAAAGTTACATGTCTATGCAATTCATTAATATGGTTAAAATGATGCAATCATGTAACAAAGTTACACGTATATGCAACAAAGTTATGTTTGGCAGGGAATTTCTTCATGTTGTCTCTAGACAATAACCACCAGTGGCTTATCACCAACGTGTGCCTTTCAACGTTGTTATGTGACATGTCTTGCATGCTATGTAATTTTGATGGCTTCAGGTAGGCTCAGTGATACAAATGTTGTTATTATGTTTGAATTTGAAACATTGGTGCAATTACTGCAATGTTTACCAACTTATGTGATTAATTTTGGACAATGCTTGCAGCGTGTTCAACATGAACTGATAGTAGTATTGCTGAAATATTTCTAAAAAATACACAAATTTCTACTTCGATAAAGTTAAAAAGATTGACTTCCAAAAGCACCATTATTTTAGGACTCAATTTCTGCAGGATGCATTAGTAAGTTTCATGAGCTTTAAGGCGGTGTAATCATGCTGAGGTCACTGCGGGCAAAAGGGGTAATTAGGTAGAGGTGGTTGGTGTCAGGGGCAAGTGGCCCTGGTGATGACATCAGAAGTTACTCAACATTGCATCAATCAATGCGAGTAAATATAAACAATTGGGGTGTATCTCCAGGGTGTTTATATTATTACATGTCATTTTGCCAACAGGTCATACCAATGCCCTTGTTACCAAAGCATAGTTTTTTCACAGGGAGAAAACTTGTTTATTTGTATTATATTTGTACAATAATAGTTGGGTGTTGGATACAGTCATATCTGTTTAAAAATAATGTCTGTGTCATGCCAGTTTGTGAACACAAAGTAGGTTTAATTACGAAATTAATGTTTAAAAACTAAGAAATTCTGGGTTTGGCTCAGCATGTCAGAACTAACAAAACAGTACCAGTTTCATTCATATGTATACATTCTTATATATACTAGATCAATTCTGTAAACAAGTTATATTTGCTTGATGCTAGAACTGGCTGAATTAAGATAGAGATCTTACTGTTGACATGGTGAAACTGTTATCAGTAAAGGTCTACTAGCTGTAGTGCAGTTAGCCTTATTAAAATAATATTAAATTGCATAGTTAAAACTGTACTAAGAGCACAGAAATCACTGATATTTCAAGTCATTAGCCACAAGGCCAGGAAAAGCCTGAAGACACTAGATATATCATGACCAGTCGTCCAGTGTAAAGGTTTGATAATCCAAATTTTATATTTACCTTGAATGTCACAAGTATGCGCCTGATCCATATCAGGGTTCCTCTGTGCAAAAATCTTCTGTTTTGTATAAAGCTAACATTTTGTAACTGTTTGATCATTGTGCATGTCTTATGTCTCCATGTCATATTACTTAGAAATGGTACAAATAACAAAACCAATAATTTATTTCTGTATTTTATATTACAAAATATATATAATATATATATATATATATATATACATGTGTATATGAAATGCAAAAGACTTGTTTGTTGTTGTTCACAGCTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03178	CPSF_A	CPSF A subunit region	Repeat	Interproscan
PF10433	MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004871	Domain	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018846	Domain	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050358	Family	RSE1/DDB1/CFT1/CPSF1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10644	DNA REPAIR/RNA PROCESSING CPSF FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005686	Cellular Component	U2 snRNP	Interproscan
GO:0030620	Molecular Function	U2 snRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00497.1 global RNA-seq network