Gene detail

Detailed information of RPACG00282.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00282.1	MIP08469P	tig00000002	2950216	2952369	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00282.1

ATGAGTAATGAGACAGCGAACTGCTACTCGGTTGATGGCGGCGTCAGTTTCGCCGTCCGTGGGCGCATGCGCACACCGAGACTCCGCCCCGGCAAGCGGTACAGTGGAGGAGGAGTGATCAGACGTCGCCAGGTAAACGCCGTCGTGCGTATAAAAGGCGACTTGCAGCCACTGGACGTGCCTAGGCCGCAACAGATGCTGGCAGACGACAGAACAGTGTTGTGTTGCTCCAACAGCCGACGGCTGACGCGGGCGACTGCCGCCAGCTTCACAAGCATCATGAACATCATCGTCGCAGTCCTCCTTCTCGTTATCATCGCCGACGGTTTCGCTGACGACTCAAGTGAGAAGCAGCGAGATGGGACGAAGGTGGCGTTGAGCATCCGCGTCGACGACAGTACACTGCGGCCTGTTGCTGGCACGAGCCAACGGCGACTAAATCCTATCTCTGTGAACTACATTGGTGGAGATAAACGAGAAGAAACCACAGCGAAACCAAACAGCATAAACAGTAAAAATGGTGCCTTCAAAAAGAGAGGTGAACCATCGTACGATGAATTTGTGTTTGGAAAGAGAAATCATCCTTCCTACGAGGAATTTGTCACCGGAAAGAGAAATGATCGTTCGTCTGAAAACTCTGTGACCACGAAGAGAGATCATCCATCGTACGAGGAATTTGTCACTGGAAAGAGAGGTCATCCCTCCTATGAAGAATTTGTCACTGGAAAGAGGGGTCATCCTTCGTACGAGGAATTTGTCACCGGAAAGAGAACTCATCCTTCCTATGAGAAATTTGTCACCGGAAAGAGGAACCATCCTTCGTACGAGGAATTTATCACCGGAAAAAGAGATCATCCTTCGTATGAAGAATTTGTCACCGGAAAAAGAGGTAATCCTTCCTATGAGGAATTTGTCACCGGAAAGAGGAACCATCCTTTGTACGAGGAATTTGTCACCGGAAAGAGAGGTAATCCTTCGAATGAAGAATTTGTCACCAAACAGAGGAGACATCCTACGTATGAAGAATTTGTCAAGTGGAAAAGAGGACATCCCTCGTACGAGGAATTTGTCACCGGAAAGAGAGGTCATCCTTCCCATGAAGAATTTGTCACTGGAAAAAGGAGGCATCCTTCGTACGAGGAATTTGTCACCGGAAAGAGAAGACATCCTTCCTATGAGAAGTTTGTCACCGGAAAGAGAGTTCATCCTTCGTACGAGGAATTTGTTACCGGAAAGAGGAACCACCCTTCGTACGAGGAATTTGTTACCGGAAAAAGAGGACAACCGTCGTATGCGGACTTCGTAATTGGTAAGAGAAATCAAACAGTTCTTGGAGAAATTACAACCGGAAAAACACGACAGCTTTCTTTCAAGGATGTCGTCAACGGTAAGAAAGTTAGAAATGCGCAGAAACAGTTGGTGACTACAAACAAACGCGATCTATCATACGAAGATTTTATAACTGGGAAACGAGCAGATCCTTTGTATGCTAACTTCGTCATGGGGAAACGTGACGGCTACAACGACTTTGTCTTAGGCAAGCGATCACCTCCAGCCGCTAGAATAGCAGGAACGAACAAACCAACCTCCGACGTCACAAAACACCGACCTAAACGAAGCCTGATCAGCGCGGCTGTCAAGAAGCGGGATAGTTTCGCCGACTTCGTCCTAGGTGGCACTGGCTACATTGACCATGTCCTCATGAACAAGGACCGGCGTCTTCACAGCCTGTTTGGCGGCTTTCGGAAGCAGAGAAAATCTTCGGAAAATATCCAACCAAGAATGCCCCTCTTCCCCGACTTCGTGCTGAAGCGTGCGCCGCCCAACCGTAGGTACTACATGAATTACGCGCGCGAGGAGAAAGCCAACCCGAGCTTCGACGAATTTGTCCTCGGCAAAAAGCAATCCGCCCTGAATGCGAACGTCGCCGCTGAGATAGCTGTGGACAAACGTAAAAACCAACTGTGGTTGATGGAACCTCGCTTTCCGAAACACAGACCGGGCAAAAGGAACGAAGCAGACAAAAGAGCCGGGGCGTCAGCCTACGAAGCGTTTATTCTCGGCAAGAAACGAACACTGCAGGCAGACTGGATGAAGACATTTGCAGACACGAAAGTAGACGCGCCTTCCCACGGAAGGTACTGA

Transcript

RPACG00282.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052236	Family	Small GTPase RasD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46149	MIP08469P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0031681	Molecular Function	G-protein beta-subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00282.1 global RNA-seq network