Gene detail

Detailed information of RPACG00267.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00267.1	RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C	tig00000002	2558200	2569139	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG00267.1

GAGCTACTGGTAGTATAGGCTATTCTCTGGCCAGTTCTAATCAAAGGACTGTTTACAGTAAAGCCAAGTGTGATTTAGGAGGATGAGACGTCCTTCCATTACACTCATCCTGTCCGGGCTGTTTATTGCGTACATGGCACATTCCCTGTGGACGATCTCAGGTCTTTTCTTTCCGACTCCCTGTCCTCGCAACGGTCGCTGCATAAAGCCATTCATCGCACGACATCCCGATCTTGAGCTACAAGTCTACAGATCATTGAAACCAACGGTTTCATCAGCAAAATATCTAACACCTGTACTGACCTACAAGAACTTCTCAGTTCACGAGGAGTTTGAACAGGTGGTGAATGTGAGTGTGCCAACAAAGACCAGGAACAATGGCACACTACACATGCACATTTTTGTTTATCCACGGGGAGAGTCGCCCTTCTCCAGTGCCTTCATGTCATATGGCTACAGCCTACAGACGACTTATGCAGTCAAACAGGCCACTGCTTACAAACTCATTGGTGACGAGGCTCCACAGGATGTACCTAAGGCGACATCTAGTGGCAAGCCTGTGACACACTGGCGATCACGCCTCACGCTCAACGTCATGTCGGAAGAATTTGTGTTTGATGAACGTGCAATACCAGCAGACATGGGTCATTTACTGCGTATGACCCACCAGAGAGAATACTTGCCCATTCTCTATGTTGATCAACTGAGTAATCGTATCCGTGATTTAATGCACATCAACGAGAGTTGCTCAGAGATGCCGTTGACCATAAGTTATCAACCAATCTCCATCGGCAAACTACGGCTCTGGTCACAGATGCAACAGTCTCTCCAGTTGCTACAACAATTCGGATTCACGGAGAAAGATACAGATGAAGTGAAAGGAATATTTTCTGACACAAACTTGTATCTATTAATGATGACTTTCATGGTTGCCGCTTTTCATATGTTGTTTGATATTCTTGCCTTCAAAAATGACATATCATACTGGAAGAACAGGCGCAGCATGGTTGGACTATCATCACGGGCAGTTGTGTGGCGATGCGTAAGCACATTCATCGTCTTCTTGTACCTGCTGGATGAGAACACTAGCATGCTTGTGCTTATTCCTGCAGGCATCGGCACAGTCATTGAGTTGTGGAAGGTGACAAAAGCGTTCAAGATGAAACTTCACTGGAACGGTCTGAAGCCTGTGATAACGTTTGGTGAAACGTCAGACAAAGAAAAAGAAACACAACAATTTGATACACAGGCGATGAAGTACCTCTCCTACGTCCTCTACCCTCTGTGTCTCTGTGGTGCCATCTACTCTCTCCTCTACATGCCACACAAAAGCTGGTACTCCTGGTGTGTCCAAAGCTTGGTAAATGGCGTGTATGCCTTCGGCTTCCTCTTTATGCTACCGCAGCTCTTTGTTAACTACAAGTTAAAATCAGTTGCCCATCTGCCATGGAGAGCATTTATGTACAAGGCATTCAACACGTTCATAGACGATGTATTTGCCTTCATTATTACAATGCCAACGGCCCACAGGCTGGCATGCTTCAGAGATGATCTAATTTTTGTAGTTTACCTCTATCAACGATGGCTTTATCCCGTGGACAAGACGAGGGTCAACGAATATGGTCAATCATTTGATGATGAGAAAGACAAGGAGACAAAGAAGACCAAGTAAAGTCAACCTGCCTGACGCAAATGGGACAAAATTCACAAAAAAGTTCATCAATTCATGATGAAAATTGTAGAAGTCTAGTGGCAAATTTGTTACTCATGCAGCAGGTAGAAATATCTGCCACCTGCATATTTTTAGTTGTCTCTTTGTGAGCTGATGTTTGTTGTATTATTATGGAGCCATGATGTAGTGGAACAGATATATATATAGTACCTTAAAAAGACACAGTGGATGTCTGATGTAAAACTAATGGATGGAATTGCGTAGCAAAAGAATAAAAACTCCTAGCTCATGACATATAAGTATCAGTTTGACCAAATACTGACATTTGTAGCTGCATGTTTGTGTCTGTCTACCTTTGTATTTGTAAGTAATATGAACTTTCGCTTCATTTGCTGAATTGTAATGAAGGCTTTCTGGTGTATTAAATCTCACAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051641	Family	RGK GTP-binding regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45775	RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005246	Molecular Function	calcium channel regulator activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00267.1 global RNA-seq network