Gene detail

Detailed information of RPACG00263.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00263.1	STG PROTEIN	tig00000002	2476103	2503749	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00263.1

ATGAAGGATTTGTTATCTTCAGATATAGAACTTTATCAAGAGGATTCGCTGGATGATGGCAACTCCGGCGATATGAACTTAGATGACATAGATTCACCGGATCTGAGTCTTGATGACTTGGAGTCACAGGAGTGCGGCCAGGGAAACCCAGATGACGACCTGTCAGCAATACAGAAGTTGGAAAGATACCTCAACAGTGAAAATGTCTACAGCAGGCAGATGGTAGCTCGCAACCTGCTGGAAACAATTAGGTCAGGTGAACCAAATGCAGAAAATGCCACAAAAGTACTGGAAGCAATGGCCCAGTTGGCAGAAGACCCAGATCCGATGGTGCGTACAGAACTTATGGAACAGGTGCCACAAATTGCAATATTCTGCCATGAGAACGCACCACTGTTCCATGATGACAAACCCATCTCCACTTACATCCTGCCTATCATAATCAAGTACTTGACATACATCAACAATCAGGTACGCAAGACAAGTCAAGCTGCACTATTAGTGCTATTGGAACAAGGCCTATTAGAAAAAGGGGAGGTAGAGAAGCATGTATGTCCAGTCATCATCGAGTTAGCCGGTGCTGACAGCCCTGATGACTTCCGCACAGAAGCTGTTGCGCTCATGAGCAAGATGGCGCCACTGGTTGGTGACGACGTGACATGCAGACTCTTTCTGCCGCGGTTTGCAGATATGTGCACTGACACACTCTTCCACGTCAGAAAGGTGTGTGCAGCTAATTTTGGCGACTTGTGCAGTGTAGTAGGGCAGGACAGCACAGAGACATTGCTGCTACCCAAGTTCTGCTTCCTGTGTGAGGATGGAGTGTGGGGAGTGAGGAAGGCTTGTGCGGAGTGCTTCACGCAAGTCGCATGTGCTTGCTCAACCGACGTCAGACGTAAAGACCTAGCTCAGACCTTCCTATCACTCATCTGTGATCAGTCGAGATGGGTACGCATGGCAGCCTTTCAAGCACTCGGAGGGTTCATTTCAACGTTTGCAGATCCTAGTATGACAGGGTTATATTTCAATGAAGAGGGGTTATTAGTTGTCGGCAAGGCGCACGACTGTAGAAGCAGCAGTGATGAGGACGAGTGTGACCACCCGGTCTACAGCGACTGTGACTGCTGTGAGGATGCAGCAGACACGTCGCACTTCACCACAGACGCCACACCAGATACTAAGGACAGTGGCACTGGGCAGGAAGCCGAGACGATGGAAAAGGTGTCTGACATGGACACCAATTGTGATCCAGAAGACGCAGCTGGCGACACAAACATTAATAACGCTAGTAGCGGTAGTGTAGACATCTCTGTGGAGGAAAACAGGGCACAGCACTATGAGTGTCTTTCAGGGGGTGAGAAGCTACAGGACAATGGAGATTCGACTGGTGCAGCCAGTCAAGGGGGTGATACCAGTGGTGTGACGCAAGAAAATGACAGCCTCTCGTCGAGGGACGGCAACGCCAAAGATGCGTATGCAGCGACGCCGGAGAAAGAAACTACGGAGGAGTTCAACTCGTTTCTCTATTGGCGCACTCCATTGCCAGATGTCGATGTCACAGTCACGGCATCCAGTGTTGCATCACAAGACACAACAGAGTCAGTGACGACACACGACAACACAGCAATGACGACGCAGTCAGAGGCATCAGTTGATGAAGGCTCCACTGATACGGACACGGAACTGACAGAGAGCATCACCAGTCTACATGTTGGCATGGGCACTGGTGACGCGTCTGCGTCGAATGATGCCGCTGAGCCAGCTGGTGTCGTAGTGCACACCGCCAGCCTGGTCACGACGGAAGAGGAACCAACGGAAACTGTTGCTCACTTTGGCACGACACATGTGCTTGGTGAACATGTCGGGGAACTGGCAATGAAAGTAATAGATGGCGTTGTACAAGATTTCTCAGATGCAAATATGACATACTCATTAGTGGAGGACAAACTGTGTGCGCGGCGAGACAGTTCAAGTAGAGGGGACAAAATGTCCGACAAAGAATATCATCCAGATCAGGATGTCATACCCCAAGTACTGCTTGACCAGTACCTCAGCATGACAGACCCATCGCGTGCACAGACGGTAGACTCGGAGATTGCCAAGCACTGTGCCTACAGCCTGCCTGCGGTTGCCTATACTCTTGGCAGGAAGTACTGGCCATGTCTGAGGGGACTCTACGAGACCCTCGCAGCAGAAATGCAGTGGAAAGTCCGACGCACACTTGCATTCTCCATCCACGAACTGGGAATGATTCTTGGTGAAGAAATCACAACAGCAGATCTTGTGCCAATCTTCAATGGGTTCCTGCGAGACTTGGACGAAGTACGGGTTGGTGTGCTCAAGCACCTCGCTGATTTTCTTAAGTTGCTCAAGCCAGAACTGCGCCGTGAGTACCTCACAAGGTTGACAGACTTCCTAAACACTGATAACAATCGGAATTGGCGTTTTCGTGAGGATCTTGCAGAACAGCTGGGGCTGCTCGTACAACTCTTCTCAGCCGCAGACGTCAGTCTCTACATGTTGCCCATTGTCTTCACACTGGCTTACGATAAAGTTGCTCAAGTTCGGTTGAAGGCATTCACTGCTATGAGTGTTGTGATGAGTCATCTGGCTGCAGATGAAAATAAAGAATTAATACAAATTTACATCGCTGACCTGATTGATAAGTTCGCCTGCAATAAGCGGTGGACCCACAGACAGTCATTTCAACACATATGTTACTGTATCCTGGAAGACGAATCACTAAGTAAAAATAGAGTAGCCAGTGAGCTCTTACCAGCCATGTTGAAGATGGCATCAGACCCAATCGTCAACGTTCGCATCACACTGGGAAAGACATTAGCACACCATGTGATAACTTCAGACTACTTCATGAGTGCTAAGAACCCCCACCTAGGAGACTTGTTGAATGCTGTGCAGGCGCTGAGATCAGATGGCGACCGTGACGTGTGCTGCTTCATGCACTGGGCGCCTGAGTCTGACCACCCTAGCAATCTAGACACAATTCCAGTGTAG

Transcript

RPACG00263.1

GACTAATTCGCATTTGTTCGTTTTAATTGTGAGATTTCCTTAAAATTTCAAATGGCTAATGAAGGATTTGTTATCTTCAGATATAGAACTTTATCAAGAGGATTCGCTGGATGATGGCAACTCCGGCGATATGAACTTAGATGACATAGATTCACCGGATCTGAGTCTTGATGACTTGGAGTCACAGGAGTGCGGCCAGGGAAACCCAGATGACGACCTGTCAGCAATACAGAAGTTGGAAAGATACCTCAACAGTGAAAATGTCTACAGCAGGCAGATGGTAGCTCGCAACCTGCTGGAAACAATTAGGTCAGGTGAACCAAATGCAGAAAATGCCACAAAAGTACTGGAAGCAATGGCCCAGTTGGCAGAAGACCCAGATCCGATGGTGCGTACAGAACTTATGGAACAGGTGCCACAAATTGCAATATTCTGCCATGAGAACGCACCACTGTTCCATGATGACAAACCCATCTCCACTTACATCCTGCCTATCATAATCAAGTACTTGACATACATCAACAATCAGGTACGCAAGACAAGTCAAGCTGCACTATTAGTGCTATTGGAACAAGGCCTATTAGAAAAAGGGGAGGTAGAGAAGCATGTATGTCCAGTCATCATCGAGTTAGCCGGTGCTGACAGCCCTGATGACTTCCGCACAGAAGCTGTTGCGCTCATGAGCAAGATGGCGCCACTGGTTGGTGACGACGTGACATGCAGACTCTTTCTGCCGCGGTTTGCAGATATGTGCACTGACACACTCTTCCACGTCAGAAAGGTGTGTGCAGCTAATTTTGGCGACTTGTGCAGTGTAGTAGGGCAGGACAGCACAGAGACATTGCTGCTACCCAAGTTCTGCTTCCTGTGTGAGGATGGAGTGTGGGGAGTGAGGAAGGCTTGTGCGGAGTGCTTCACGCAAGTCGCATGTGCTTGCTCAACCGACGTCAGACGTAAAGACCTAGCTCAGACCTTCCTATCACTCATCTGTGATCAGTCGAGATGGGTACGCATGGCAGCCTTTCAAGCACTCGGAGGGTTCATTTCAACGTTTGCAGATCCTAGTATGACAGGGTTATATTTCAATGAAGAGGGGTTATTAGTTGTCGGCAAGGCGCACGACTGTAGAAGCAGCAGTGATGAGGACGAGTGTGACCACCCGGTCTACAGCGACTGTGACTGCTGTGAGGATGCAGCAGACACGTCGCACTTCACCACAGACGCCACACCAGATACTAAGGACAGTGGCACTGGGCAGGAAGCCGAGACGATGGAAAAGGTGTCTGACATGGACACCAATTGTGATCCAGAAGACGCAGCTGGCGACACAAACATTAATAACGCTAGTAGCGGTAGTGTAGACATCTCTGTGGAGGAAAACAGGGCACAGCACTATGAGTGTCTTTCAGGGGGTGAGAAGCTACAGGACAATGGAGATTCGACTGGTGCAGCCAGTCAAGGGGGTGATACCAGTGGTGTGACGCAAGAAAATGACAGCCTCTCGTCGAGGGACGGCAACGCCAAAGATGCGTATGCAGCGACGCCGGAGAAAGAAACTACGGAGGAGTTCAACTCGTTTCTCTATTGGCGCACTCCATTGCCAGATGTCGATGTCACAGTCACGGCATCCAGTGTTGCATCACAAGACACAACAGAGTCAGTGACGACACACGACAACACAGCAATGACGACGCAGTCAGAGGCATCAGTTGATGAAGGCTCCACTGATACGGACACGGAACTGACAGAGAGCATCACCAGTCTACATGTTGGCATGGGCACTGGTGACGCGTCTGCGTCGAATGATGCCGCTGAGCCAGCTGGTGTCGTAGTGCACACCGCCAGCCTGGTCACGACGGAAGAGGAACCAACGGAAACTGTTGCTCACTTTGGCACGACACATGTGCTTGGTGAACATGTCGGGGAACTGGCAATGAAAGTAATAGATGGCGTTGTACAAGATTTCTCAGATGCAAATATGACATACTCATTAGTGGAGGACAAACTGTGTGCGCGGCGAGACAGTTCAAGTAGAGGGGACAAAATGTCCGACAAAGAATATCATCCAGATCAGGATGTCATACCCCAAGTACTGCTTGACCAGTACCTCAGCATGACAGACCCATCGCGTGCACAGACGGTAGACTCGGAGATTGCCAAGCACTGTGCCTACAGCCTGCCTGCGGTTGCCTATACTCTTGGCAGGAAGTACTGGCCATGTCTGAGGGGACTCTACGAGACCCTCGCAGCAGAAATGCAGTGGAAAGTCCGACGCACACTTGCATTCTCCATCCACGAACTGGGAATGATTCTTGGTGAAGAAATCACAACAGCAGATCTTGTGCCAATCTTCAATGGGTTCCTGCGAGACTTGGACGAAGTACGGGTTGGTGTGCTCAAGCACCTCGCTGATTTTCTTAAGTTGCTCAAGCCAGAACTGCGCCGTGAGTACCTCACAAGGTTGACAGACTTCCTAAACACTGATAACAATCGGAATTGGCGTTTTCGTGAGGATCTTGCAGAACAGCTGGGGCTGCTCGTACAACTCTTCTCAGCCGCAGACGTCAGTCTCTACATGTTGCCCATTGTCTTCACACTGGCTTACGATAAAGTTGCTCAAGTTCGGTTGAAGGCATTCACTGCTATGAGTGTTGTGATGAGTCATCTGGCTGCAGATGAAAATAAAGAATTAATACAAATTTACATCGCTGACCTGATTGATAAGTTCGCCTGCAATAAGCGGTGGACCCACAGACAGTCATTTCAACACATATGTTACTGTATCCTGGAAGACGAATCACTAAGTAAAAATAGAGTAGCCAGTGAGCTCTTACCAGCCATGTTGAAGATGGCATCAGACCCAATCGTCAACGTTCGCATCACACTGGGAAAGACATTAGCACACCATGTGATAACTTCAGACTACTTCATGAGTGCTAAGAACCCCCACCTAGGAGACTTGTTGAATGCTGTGCAGGCGCTGAGATCAGATGGCGACCGTGACGTGTGCTGCTTCATGCACTGGGCGCCTGAGTCTGACCACCCTAGCAATCTAGACACAATTCCAGTGTAGTGCTGCAGGGAAGGCCACTAGGACTGACATGCGTTGCCTTTGCACTGCTCAGTAGCACGGCTGCCTGGCAGGTGCCTGTTGTGATATATCTAGCCCTTCACGGTGGCACCACCAAACACTGGTCACTTCTTGATCGGGCATTCAGTCTGAGCGGACTCATCTGCGCCATCTTTGTTATCAGATGACAAGATTCCGGTTTCGTCCTGACAGGAAATGAATGCAGCTCAAGCGTGGCCATTGGCTGTTTGGTGCGGTCGCACTGGAGAAGGCAAATTGTGTGATCGTAAAGAGATGATATTTTTTATATTGTAAAATCTTATTGAATTGTTAAAACTGTGTGTCGTGTACAGTAGAGATGTAGACGAATACTTGTACAGAGAAGAGGCGAAACCTCCAGCTGGAGGTGCCGGGACATTCATAGCAGTGTCGATTGGTCTTTCACACCCTGTGAGGGTGGCTTATGGGATTTAGTGGATGCACAGTGCCTAGGTAATTCTGCCGATAATAAGAACGTGATACGTAGTGGCAAATGAACTCTCAGGTGTGTACGAGGGTGCATATCGGTGAACTCGATCACAGCATATTCTCGTCGTTTTGATGACGAAGCATAAACCTTCACTAGCAAGGAACTTTCAATTTGTATTTCGCATCCATGCAGTGGGCGATGAAACACAAACGTTTGTATTGTATCAGTTTAATGCACATGAGTATGTAGAACAATTTTCATTGACTAACTGGGTATAACAGAGTATAAACTGGATTTTTGTGTCATTTGTATACATTTCTGACACCACTACATTTAAGATAAACAAGATTTGGCAACAAATAAGTCACGAGATGGATTTTCACAAATAAAAACACAAACCAGCATTGATAACATTAAACTTAAAACATCTTTTGTCCAGCTGTGTTATCATCAAACAATTTTTGACAGATTTTTTATTTAATTAAACAGTTGAATTGTAGTAATTTAATTAAACACAGTTGACTAGATGTTGAGATCCAAACAAATCCAGGAAATTTTAGCCGGTAATTGCACTGCAGACCAGCTAAGTAAATATTGGTTGACCATTTAGCATGTACATTCTCACTTTGCCTGTGATCTGTGTGTGGGTGTTTTACGATATGCAAGAAACTAAATGTCAGTATTTAAATGAACCATATATGACACGTTATAATTTCATTTGCATAAAGCTGGGCTTCGATGAGACAATATTATTACAAGATTTGATAGTAATGGGATTGTTCGCTGTAACGTTTATACTGTAAACCAAGCGTCACTATTACACTTCTAGGTGATACTGTACTTCTGCTATGAGACATCAAGGGTATTAACTGGACACAGTGGCATTATTGCCTTGAGTAAAACCCAACTACCCAAAGGGGGCATTATCTACAGTTCAGTGATGCCCGATTTATTGAAGTGAAATTCGACATGTTTGTGTGAGACAAAAGCGTGTAAAGCAAAATTCTTCTGTCACACGTTGGTGCTGTGAGTGATATTTATCCACAGTTCTGTTATCTACAAGCTCAGTCAGTGTAGCAGTGCAGTGATATATTTATATGTAAAGGTAGAAACTAGCCAAGACGTTCTCAAATCATTGTATAGCTGTACAGAGTTAATTAAGTTTTTGTCGTAGCCTATTTAATGACATCGTGTTGATTATACATGTTCAAATCTTGGAATAACCCGTGTATGGGGCCTGGCATGTTTTCCAGTCTGGCCGACAAACGGTCGGAAGTGTTTCGGTAATAATGTAACTTACATTACACATTTGTGAGAGGATAATTTAACGGTTAAATATAATTACATTTGATGGATGTCGTTAACATTTGTAGTACAAGCAGGATGAATACATGTGTAACGATCTGTGATGATAAGTGTAGTTTTCACGACACAAATCGATTTAACAACATGTAGGCAGCATGACGGCGATATCGACTACTAACACGACGCATTTAGACATTGTGATATTTAAATCATTGTTGTTTGGCTGATTCTCCTGTCGGTTGTGTCCAACGATAGCGCTACATTTGGTCTTCATACTACGAACATCTCATCAGAAGGGTCTTGTTTAGTCACATCCTGAAGAAGATTACTCTCGAGTTGTGTCCATTGACTATTTGCAACAGGTGATAATGAAGAATGGCGAATATTACGACGGAAGAATGACGCAATCTGCATGGTCCTAAAACTTACGAAACTCATAAATAAAACGATGTGATCAATGAATGGTGTCTTGTGTACCTGAAGTGAGGGCTGACATATCTATAGCTGTATACATGTGTGTGTTGAGCTATAATTTTATTAAAGAGCCAAACAGAATTGCCTTTATGCGAGTCCAGAATTCTAGTGCTGTAATGCAGTCCGCTTAATGTTGTCGATTGGAGGTAGCAAAGGAACGCCAAGGCTGTAGCCACATTTGACCATTCAAACACCCTAACATTTACAGGAATTTTCCTGTATACCATAGCATTAGCATGCCTGCTTAAGCATTCTCTTTAATCGGTCTTTATCTGTACGAAGGAACTATGGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21410	MAP6	Microtubule-associated protein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007882	Family	Microtubule-associated protein 6	Interproscan
IPR026135	Family	Uncharacterised protein C6orf15	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15817	STG PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00263.1 global RNA-seq network