Gene detail

Detailed information of RPACG00249.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00249.1	ATP-DEPENDENT PROTEASE	tig00000002	2325045	2346491	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG00249.1

ATGTCAGTGGCAACAAGAGATGATCTTCTGAGTGCGCCGACGACCGTGAAGGTCGTTGTTGTTGCTGGTGTTCTACCACCCGAGGCGGTATATCGCTCCGCGGTGTCACCGTGTCGTCACGCCCTGGCAACGGGACACCAATGGCGCGACCGAGTTATTGATTATCGCCCAGCCACCGACGTTACACTGAATAGGAGTGTTCAGTTCAAGCGGTCTTGTCTTATCGCGCGCTTGCACATCTGCCGCCGGCGCGCAAAAGGTGCAGCTAACAAAAACACTGTCGGGGGTTTGGGTACGACGCAAAAGAAACGTTGGGACGCCATTGCTGCAGGAGGCGCCTTCACTGCATCAAGCGTGCAGACCAGTGAGCGGACGTTACCGAGAGGCCGGGATGTGACCGGAATGACCGTCAACGACCTCCACTACAGACTAGCCAAAGCCACGCTGTGTATGGTACTGGTGGTAGTCATCCCGCAACATGTGGCTGCGGTCTACCCCGAGTACCTGGGCTGCTTCCAGGACAGTGCGGACCAAGCCGACGTTGCCGGCATCGTTATGACCTACCCCCAGGCCGACGTTCTCGACTGCACTGCGAGGTGCCTGCTAGAAGGTTATCCCTACGTCGGCGTACAGAACGGCACCTTCTGCTACTGCGGACACACCTACGGCCGTTACGGCATCAGCTCAGACTGCAAGGAGGACTGCGAGGGGCGGGAGTGCGGGGGGCCTCTCGCCAACGACGTCTACTACACGGTCGCCACAGGATTCGAAGTGTGGAAGAGCCGTGCTCTGGCTGTGCACAACAGAAGCACCACTTTCTGGCAAGCTCGAGTGGCGTGCATCAACGAAGGCGGCGATTTGGCTTCTTTGTCAAATTCAAGAGAAGTTGAAGAGGCGATTAAATTGGCAATTGCTAAAGATATTCGGTCCAGTGTCTGGTTCGGTCTGTGGCAGCGGCAGGAGAAGACAAAGTTTGTGTACGAATGGACGAACGTCGAGTCAAACAAATTCACTCCACAAGCTCTGACGCCCTACAGCACCGAGAGTAACCTCGACGAACATTCTCAGCGCTGCGCCCAGCTGTCCTTGACTAATAACACCGTGTACTTCACAAACTGCACGGATTATCGCCCGTTTATATGTTTTCAACCGTCCCTGCCGGGGGCCGCCAACGACGATGAGACCGAGACACCGACGGAAACCCCGGACACGGGGCCGTCGATGCTCGCTTTCTACATCGTCATGCCATTCTTCGTCCTATGTTACGGCGGTTCCTGTTTCGTCTACTGCGTGCACAAAACCTTCCGTCAGTGTCGCCGCCGACATCATCGCCGCGTGGCTGTCGGCTCTTCGGTGGACGCTTTCTCCGAGATGTCCAAGGAGCGACCGCCTTCGTGGATTGCAGCGGCGCCTCCAACCACCCACCCGGGCGAATACAAGCACCGAGACGCTTCCTCCGACACCTCGAATAGGTCGTCGAGTCAACGCGTTACGGAGAGACTGGGACGGACACAACAGCTGATAGTGACAACGAGCGAGGAAAACGAAATAATGCATTCACGCTCCGGAAAAACGCAAAAGCGCATTCGTACTCGAATGAACGGGAGTGTTGAATCGTTGACCGATATCCGCATCCGGCAGGAGGAAGTGACGACAAAGCGAACGGACCGCAAGCGCCGCAGAGAGAACCCCATCAAGTCGCGACTGCTGGCTATTGAAGATGTGCTCGAGCAGAAGAAGGAATTCGGGAAGGAACGACGAGGGAAAAGGAAGATCCTCATCGCGTGATGCAGGGTGTTCTAAAAGAAATGACAGGAAGATCCACATGCATTGCGTAGTCCAAAGGAACTCTGGAAGAAAATATAGTTTCGTGAATATTGTTCGAATTGAAACAACAAACGATTCGAACGATTAAAATATGTTTGTTTTTAAAATGGACGTCCGTGTTCGCTGTAATGTTAGATTATTCTAATCATCATGTTGTTTGTAATCTAACATCTGTATCTACACCGTATAGACAATGTCGGTCTCGGACAGCATGGTATGTTGCTAATGTCATTTTGGTCCTTATCTATTCCACGCGTACTTATTATTTGGTAGTGTTGTTTTCATCCGTCGTTCTTCTGGTGTAAAGCTGTCGTCTTACATGTTTTTCTAGAAACAACATAAACTGGAACTGCAGTTTGAGTAGATTAGCAATTCAACATTAATACCGATTGATCAATCAAATATATGAACACTACGATTTCTACTGGCGAGAGCTGAATGTGTAGAGAGACATGTTTAGATGATAAATTTAAACCAATTACGCCATACAGCAATAAATTCATTTATTTCTGTACTGTAAATAAACTGTTCGTTTCGTGTGTTTTTTCGTGCCTTCGCGTTATACATAAATTGTACGTTTCGTGTTTTGATTGCGATCGCGCAGAACATTGTTGTGCCTCCTATGAGTTGATCACACTCAACCTATGCGTACCTGACTGCTGTGTGTTGACCTACACACGTGCCACTCGTGCCACTCGTGCCACTCGTGTCGCGAATATATGTTGAGCGTTTCGAAACCATCAACATACGTTGCAACTGAAGATGCATTGAATTATTAACCACACTATTTCTGCATTTATATATACAGCAGGAAGTTCCATAAATTACTAATGTCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF01434	Peptidase_M41	Peptidase family M41	Domain	Interproscan
PF06480	FtsH_ext	FtsH Extracellular	Family	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000642	Domain	Peptidase M41	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR005936	Family	ATP-dependent zinc metalloprotease, FtsH	Interproscan
IPR011546	Domain	Peptidase M41, FtsH extracellular	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037219	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050928	Family	ATP-dependent Zinc Metalloprotease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43655	ATP-DEPENDENT PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005745	Cellular Component	m-AAA complex	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034982	Biological Process	mitochondrial protein processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00249.1 global RNA-seq network