Gene detail

Detailed information of RPACG00219.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00219.1	ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR	tig00000002	1809276	1854444	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00219.1

ATGGCATGTAATGAAAGGTCTCTTCTAGGCCCATTTCAATGCGCCATGCAGGAATGCAAAGACATCTTCAATGACATTCAGACGTGTGTGAATAATGGGAAAAGGTATTTTGCAGGAAGGACAACCATCGTGGAACAGACAAACGTTCAGGCCATGGCTGATTACTGTAATCAAGTAGAACACATTGGAAGTGCTTTTGCAGAAAATGCAAAGCTGAATTTGAAGGTGGCAGTATGTGGAAGCACATCAAATGGGAAGAGTGCCATAATCAATGCAATCCTGGGACATAAGATCCTGCCCAGTAAGATGGGCGCCGTAACAAAGTCATTCATGCAAGTGGTAGGCACAGATGAGAAAGCTGCATATATTGAAGATGGCCATAAACACATGCTTATCAAGGATGCAAATGATATAGATAGTTTGAATGAAGAGGGAAAAATCATTACGATACATTGGCCAAAAAGACAGTGCCGTCTTTTGGAGGATGATGTCGTTGTCGTTGATTGCCCAGGCCAAGGCTACACGAGAAAATTGAACAGTTTCATTAACAACTGTCAAGACTCTGATGTATTTGTGCTGGTTGTTGATTGTGTGACAGAACTCAGACAGGAGGAGAAGGATTTCCTCAGCAAAGTCAAAGAGGATTGGTCGAAGCCAAATATGTTCGTTCTCGTCAACAAGTGGGACTTAACAGTTGTCGAGGAAGATACAGATGTGGATAAGCTGAGAGAGAATCTTATGAAGAGTTTAGCCACATTCTTGGAAGAAGAACTACGAGTTGCAGGACCCAATAAGGCAAATGATTATATCTACTTTGTGTCAGCAAAGGAGACGCTCTCCATTCGAGAAGAAACTCAGTTAGACAACCAAAGAAACGAAAGAGTGCAACAGGTGAAAGGCTTCAAAGAGAGATACCATAACTTTGAGATTTTCGAAACGAAGCTTCAGGAATGCTTGCGTGACGCTGTACAGATAAAATTCGGAAATCGAACTGAAAAGGGTAGCCAGATTCTGCGTGGTTTCTGCATGATCATGGACAAAATATCTAAGGAAGCTGCCAATCAGAAGGAACACATCGAGAAGAAGAAAATCAGAGCAAGTGAAGAACTTACGAAAAAATCCAAACCTTTTGACAGTATAGATGAAGAGATCCGTAACAAGATTGAAAAGGTGGTGGCAGAGGTGGAGGATAAGTTGAAGCAGATAATCGAAGCAAGCAAAGTCGAGATGAAGGAAATTGACATCTCAAATGAGAATGGAAAAAAGACCTTTGGCCTGTTGGAGAACAAAATGAATGCTATGAGAACAAAAGCAGCTACAGATGGTGTTGACAAAGTGATGCAGTTCATGAAAGACCAGTACTTGGTAAATCTTATCAACACTGAGGACAAGATGGCCGTAACAAGAGTCTACGAGCAGTCCATCAACTGTGACACTACTTCTGATAAAACATGTGACACATGTGAAATGGAAATGGTTTCGCCCACAGGTGAAATGGTGTGTGATGTGGCAGGGCTTGTGGTGGGTGCAGGAGTTACAGGACTGGTTGCTGTTGGATCCGCTTTAGCAACTGCTGTTGTAGCAGAAGCTGCAGCAGTCACTGTAGCAGTCAATGTAGTGAGCGCAGCAGTGGGCATTGTAACAGGCACCACTGTGGGAAGTCTCATCACAATCGATGTGGTTCAACGTGTCTCTAAACCGTTTCGTAACTTATGTAACTACATACCTGTATTGAGTGTGGTGAACGCGGCTGGTAGCGTCATCGCCAGTCCAGTCAATTTGACAAGAAAAGTGGTATCAAAACCATTTACTTACAACACCATTGACAAAAAAAGATTCTGCAAACAAATGGATGGCATGAAACAAAATTCTTCAACTACGTGCACATATTTAATCAAAGCAGAACTGTCAAATCGGGCTGACCAACTGAAGACAATTGCTGATGGTGTACTGAAGGTGATGAAAGAGAACATTGAACTGTTGGACAATGACTCTAAACAACTGGATGTGATCATATCAGAATCCAACTCATACAAGAAGACAGCTACTGTACTGCTCGAGAAGTTGGACAAGTTCACCAAGAAGTACCTTAGACGCGTGGTATAA

Transcript

RPACG00219.1

CCACAATCTTAGCATAAGCGCACGCAGTCACGTCGGCCAGATACTGCATGTCCGAGTGAAAGACACAGCGAAAAAGTCACCAGCGATAACGAAAGTCGGCAATATAGAACGTCTTCACGGAAGCAACAGGTCGTTTTGTCTACATAGAGTAATTATGGCATGTAATGAAAGGTCTCTTCTAGGCCCATTTCAATGCGCCATGCAGGAATGCAAAGACATCTTCAATGACATTCAGACGTGTGTGAATAATGGGAAAAGGTATTTTGCAGGAAGGACAACCATCGTGGAACAGACAAACGTTCAGGCCATGGCTGATTACTGTAATCAAGTAGAACACATTGGAAGTGCTTTTGCAGAAAATGCAAAGCTGAATTTGAAGGTGGCAGTATGTGGAAGCACATCAAATGGGAAGAGTGCCATAATCAATGCAATCCTGGGACATAAGATCCTGCCCAGTAAGATGGGCGCCGTAACAAAGTCATTCATGCAAGTGGTAGGCACAGATGAGAAAGCTGCATATATTGAAGATGGCCATAAACACATGCTTATCAAGGATGCAAATGATATAGATAGTTTGAATGAAGAGGGAAAAATCATTACGATACATTGGCCAAAAAGACAGTGCCGTCTTTTGGAGGATGATGTCGTTGTCGTTGATTGCCCAGGCCAAGGCTACACGAGAAAATTGAACAGTTTCATTAACAACTGTCAAGACTCTGATGTATTTGTGCTGGTTGTTGATTGTGTGACAGAACTCAGACAGGAGGAGAAGGATTTCCTCAGCAAAGTCAAAGAGGATTGGTCGAAGCCAAATATGTTCGTTCTCGTCAACAAGTGGGACTTAACAGTTGTCGAGGAAGATACAGATGTGGATAAGCTGAGAGAGAATCTTATGAAGAGTTTAGCCACATTCTTGGAAGAAGAACTACGAGTTGCAGGACCCAATAAGGCAAATGATTATATCTACTTTGTGTCAGCAAAGGAGACGCTCTCCATTCGAGAAGAAACTCAGTTAGACAACCAAAGAAACGAAAGAGTGCAACAGGTGAAAGGCTTCAAAGAGAGATACCATAACTTTGAGATTTTCGAAACGAAGCTTCAGGAATGCTTGCGTGACGCTGTACAGATAAAATTCGGAAATCGAACTGAAAAGGGTAGCCAGATTCTGCGTGGTTTCTGCATGATCATGGACAAAATATCTAAGGAAGCTGCCAATCAGAAGGAACACATCGAGAAGAAGAAAATCAGAGCAAGTGAAGAACTTACGAAAAAATCCAAACCTTTTGACAGTATAGATGAAGAGATCCGTAACAAGATTGAAAAGGTGGTGGCAGAGGTGGAGGATAAGTTGAAGCAGATAATCGAAGCAAGCAAAGTCGAGATGAAGGAAATTGACATCTCAAATGAGAATGGAAAAAAGACCTTTGGCCTGTTGGAGAACAAAATGAATGCTATGAGAACAAAAGCAGCTACAGATGGTGTTGACAAAGTGATGCAGTTCATGAAAGACCAGTACTTGGTAAATCTTATCAACACTGAGGACAAGATGGCCGTAACAAGAGTCTACGAGCAGTCCATCAACTGTGACACTACTTCTGATAAAACATGTGACACATGTGAAATGGAAATGGTTTCGCCCACAGGTGAAATGGTGTGTGATGTGGCAGGGCTTGTGGTGGGTGCAGGAGTTACAGGACTGGTTGCTGTTGGATCCGCTTTAGCAACTGCTGTTGTAGCAGAAGCTGCAGCAGTCACTGTAGCAGTCAATGTAGTGAGCGCAGCAGTGGGCATTGTAACAGGCACCACTGTGGGAAGTCTCATCACAATCGATGTGGTTCAACGTGTCTCTAAACCGTTTCGTAACTTATGTAACTACATACCTGTATTGAGTGTGGTGAACGCGGCTGGTAGCGTCATCGCCAGTCCAGTCAATTTGACAAGAAAAGTGGTATCAAAACCATTTACTTACAACACCATTGACAAAAAAAGATTCTGCAAACAAATGGATGGCATGAAACAAAATTCTTCAACTACGTGCACATATTTAATCAAAGCAGAACTGTCAAATCGGGCTGACCAACTGAAGACAATTGCTGATGGTGTACTGAAGGTGATGAAAGAGAACATTGAACTGTTGGACAATGACTCTAAACAACTGGATGTGATCATATCAGAATCCAACTCATACAAGAAGACAGCTACTGTACTGCTCGAGAAGTTGGACAAGTTCACCAAGAAGTACCTTAGACGCGTGGTATAAAGTCTCATTGCAATGCAGTACCACAAGAACGTATCGGTACTAGCCACATGTCTAGCCTTTGAATAACTAGATTTTATAACCATGTTTGATTCTGGTTATTTAGAACTGAAACATTCAACACTCTTGACAAAGAGTAGAGCATTGGAGTTGCAGATTATTTCTAAGTAACAGCTTTTTTAACTAATTTACTTGAGTACCAACAAAACACCTTTCACTAGATACAGTGTCCACTGGCTGACAAATACATCTAGCTGGTTCTGTCACAATATTAAATAAATCACTAGTTCAAATTGGTGATCTTGTCACACTTATCTGATGGAATTCAGGTAATACTATAGCAATGTATCAAAGCAATCTGTTAAGCTCACTGCAGTAAGGTTTGTTTCAGTGATGGTAAATTGCTTCATTGCTTTTGTTAAGTATTTATCATTTAAGTTTTTGCTAGTTGGCATTCCACGTTGTATGAATTTTCAAACATATATTATTCATTCATAACATATGCATACCAATCGTATCCCCTGAGAACATTAGTTGGAATGATTCCATATATTCCTAAAACAGCATAGGCACAACACTGCATTATACGATATTTATATATATATATATATATATATATATATATATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10163	EnY2	Transcription factor e(y)2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018783	Family	Transcription factor, enhancer of yellow 2	Interproscan
IPR038212	Homologous_superfamily	Transcription factor EnY2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12514	ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000124	Cellular Component	SAGA complex	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0016578	Biological Process	obsolete histone deubiquitination	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071819	Cellular Component	DUBm complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00219.1 global RNA-seq network