Gene detail

Detailed information of RPACG00193.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00193.1	CELL DIVISION PROTEIN KINASE	tig00000002	1169742	1198495	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00193.1

ATGCGTATCACAACAGTCAACCTCGCGGGGGATTCATTCTGGAGTAAGTCTGGTTCTGAAGGGCGATCCCTGCAGAACCTCGCACACAACAAGCAGCGGATTAAGAGTCCATTCTCGATCAATGTTGTCAGTGCTCATAAACGGTACATCTCGTTAAAGACAATGGAGAACATTGGACTTGCCCACGATGTATGCAACCAGCTTCTAAAGCACCTCGTCTCGAACGCCTCGATCTTCTCCGTCATCGTTGCCATCAGAGTCCACCTTTCGCAACCATACGGCAGGATGTCGATAGAAGAGGCACTGTACAGTGTGATTTTGGTTGACAAGCTGATGTTGATGTTTCTTTTGTTTCTGCTGTGGTTGGTCATTGCAACTGTCGCAAAGCACATCACTGTCGCTCTGTCGCCCTGTCGCCCTGTCGCCCTGTCGCCCTGTCGCCATGTCGCCCTGTCGCCCTGTCGCCATGTCGCCATGTCGCCCTGTCGCCCTGTCGCCCTGTCGCCCTGTCGCCCTGTCGCCCTGTCGCTCTGTCGCTATGTCGCTCTGTCGCTCTGTTTCTTTGTCCGTTCATCGTTTATTATCGTTCAGATTGCTTCACGTGAGGTCAACAAACAAACGTTTCCGGGCTTGTCAACCGATTACGTTGTCTGTTGTACAACACCGGTTAATATGCATGTGTTAAATGTAAACCGGTTTTTGTTTAGAAACCTGAGATTGGCGAGACAAACAGTGAGATGGAAGACCACAGCAGTGGAGAGAGCGGAGAAGTACAAGCAGGGACAGCAGCTCCATGGATACACAGTGCAAGAGGTTGTTCCTGTTCCTGAGCTGTACCTAACAGCTGTGATGTTAACACATGACAACACCAGAGCGCAGCACCTCCACATTGCTAGGGAAGATGCTAACAATGTCTTTGGCGTTGCATTTCGGACAACGCCAGTGGATGACACTGGTGTGCCACATATACTGGAGCACACATCTCTGTGCGGCTCTGAGATGTTTCCTGTTCGCGACCCATTTTTCAAAATGCTCAACCGTTCCCTCTCAACATTCATGAATGCATTTACAGCTAGTGACTGGACCATGTACCCCTTCTCCTCACAGAACAAGCAGGACTTTGAGAACCTTCTTTCTGTCTACCTTGATGCTGCGTTCTTTCCACGGCTCCGAGAAACAGACTTCAGACAAGAGGGCTGGAGATTGGAACATGAGAATCTTCACGACGCAAACTCCCCGATCCAATTCAAGGGCATCGTGTTCAATGAGATGAAGGGAGTATTCAGCAACTCACAGAACCTGTTTGCCCAAAAGGCCCAAAACCTCTTGTTCCCCAGTCACACATACTCGGTCGTGTCAGGGGGCGACCTCTTTGCCATCCCTGACCTTACCTGGCAACAGCTGAGGGACTTCCACAAGTCGCACTATCATCCCAGCAATTCACGGTTCTACACCTATGGTAACTTTGAGTTAGAGCGCCACCTGGAACTAATCAATGAACATGCACTGAAGAAGTTCAGTAGCATCGAAGTGGAAACTTCCGTCCCCCTGGAGAAACACTGGAGCCAGCCGAGAGAAGCTGTGATCTCTTGTAATCCTGACCCAATGGCCCCTGACCCTAGCAAGCAGACGACTGTCGCCGTCTGCTACCTGCTTGCAGATATTACAGATACATTTGAGTCATTCACCCTCAGCATTCTGGGTAGTCTGCTCGTCTCTGGGGAGAAATCTCCATTTTACCAGGCACTGCTCGAAGCCAACATTGGTTCTGACTTCTCCCCTGTTCTTGGATATGATGGAGACACAAAGGAAGCAGCCTTCTCTGTCGGCTTACAGGGAATCAAGGAGGAAGACGAAGCTAGAGTGAGGCAGATCATCAACGATACTATTGACAGTGTCATAGAAAAAGGCTTTGAAACCGAGAGAGTGGAGGCCATTTTACACAAGATTGAACTTGGACAGAAGCACCAGTCAACTCAGTTTGGACTTCATCTCGGAGTGTCGTTGTTACCAGTGTGGACACATGATGGCAGTCCAACAACTGTACTTCAAGTGAACAAACATGTTGAACATTTCAAGAGTTCTCTGGACAACAACCCAAAGTTTCTGCAGGACAAAGTTAAGCAATACTTCAAGGACAACCAGCACCGACTGACCTTGACGATGAAGCCAGACGAGGAGTTTGAGATGAAGAGACAGAAGATGGAGGAGAAGAAACTGGCAGAAGTTCTTGGAGCACTCTCGGAGCAAGACCGGAGCGACATCTATAAGAAAGGATTGGAGCTTGCTGAGATTCAGAGCAAAACAGAGGATCTGTCTTGTTTGCCAACACTGAAAGTGAGCGACATTGAGCGAGATAGTGAGATCACTGAACTAAGTACAGTTTACTCAGATGGTGTGCCAGTGCAGCTGTGCGTTCAGCCGACCAACAGAGTGACGTACTTCCGGGCTGTTTCTGACCTCGGGTCACTGCCAGCCCATCTTGAGTCCTATGTGCCGTTGTTTTGCAGTGTCGTCACCAGGATGGGCGCGGGATCAATGAATTACAAGGATCTGTCAGAGCGGATTGATCTGACAACAGGAGGACTGAATGTCTCCACCCACGTGACGGACCATCATACTGACGAACACCTGTTTGAGAAGGGGATTGCATTCTCTTCATATTGTCTAGACCATAATGTCAACAAAATGTTTGAACTATGGACTGAGATTTTCAACAGACTTGACCTATCGGACACTGGTCGACTGACCACACTTGTGATGATGTGTGCGGCCGAGATGGCCGGTAGTCTGGCTGGCGCTGGACACATGTACGTGATGACCCACTCGGCCAGCTCGTTGACCACTGCAGCCCAAGTTAAGGAAGCCATGTCTGGAATCACACAGGTGACCTTGATGAAGTCAATAGCTGAGATGAAGGACTTGACCACGGTCGTGCAGCACTTGAAGGACATAGCTGGACACCTGCTGACCGCACAACACCTCAGGTGTGCTTTGAATGCGACTCCCGAGGCCATCGATTCAGCAAGACAAGTGACAGAGAAGTTCATCAGTGGCCTTCCTGGCTCCGTCTCCCCAGATCAAGCCAGCATGGGCAGCTACATCAAAAATGCGTCTTTCAAGCCCAGTCCTCATGAGACACACTTTGAGCTGCCATTCCAAGTGAATTATGTATCACGGAGTGTCAAGACTGTACCGTACACACATGCAGACTTTTCAAGTCTGAGAGTTCTTGGCCGGCTAATGACAGCCAAATACCTACATCGTGAAATCAGGGAGAAGGGTGGAGCCTATGGAGGGGGGGGCGTCTGGCAACTCGCCAGGTGTTCTCAGCTTCTATTCCTACAGAGATCCGAACTCGATGAAGACGTTGGATGCATTTGA

Transcript

RPACG00193.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR045267	Domain	Cyclin-dependent kinase 11/PITSLRE, catalytic domain	Interproscan
IPR050108	Family	Cyclin-dependent kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24056	CELL DIVISION PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007346	Biological Process	regulation of mitotic cell cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00193.1 global RNA-seq network