Gene detail

Detailed information of RPACG00191.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00191.1	AMINOTRANSFERASE CLASS V	tig00000002	1150668	1160565	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00191.1

ATGGTGCATAAATATATTTCGTTAGCCAGAAGTGGCGACCGACTCGTCAATTGTCTGCTGAAGTCAAATTGCTCAAATATCGAGCTTCGTCGAAGTCTGCATCGATTTGTGCGATTGACACAATCCACACGAATCTCGTCACTACTGAAGGAATGGAACATACTGCGAAATGATGTACCTAAGGGGTTTGAGAAGTATTTCCCCAGCGGCAAGAAGGGTGCCCAGTCAAAAACACCTCCCAAAACAACATCAAAAGATGCCCCAAGAGACCCTCCATCAAGGAGCAGCGGAGGAGGGAAGTCGTCTGACAGGAAGTCGGGCATGGAATTCTCATTTAACTTATCAAAGACATCAAAGTCAAGTTTTACTGATCCAAATGATCCCAACAACAGGATGATCTTGGGAATCATTACAGGTGTAACAATCCTAGGCATGATTGGACTTTATCAGGGTCGCTATAAGGAAATCACCTGGAAAGACTTTTTGACATATTACTTGAGTCGTGGTGTGGTCGAGAGGTTGGAAGTAGTGAACAAGAAATGGGTGCGAATCAAGCTAGTGCCAGGAGCTCAGGTTGATGCATCGGGAGTGATCTGGTTCAACATTGGCAGTGTGGAGAGCTTTGAACGCAACCTCGAGAATGCCCAGGCAGAAATGGGCATGGAAGGATCCGACTTCATCTCCGTCGTCTACAAGACAGAGACAGAGATGGCCAGCATGCTGGGATCAGCACTCAATATCATCTTGCCACTAGCACTCATTTTCTGGCTCATTCGACGGTCTTCAGGCATGATGGGGGGTGGAGGTCGGCCAGGTGCTGGAGGCAGTGGGGGAGCAGGTGGCATGTTTGGCTTCGGGCAGACCACAGCCAAGATCATGAAGGATGATGTTGGAGTGCGCTTCAGGGATGTTGCAGGCTGCGAGGAGGCGAAGGTGGAGATCATGGAGTTTGTGAACTTCCTCAAAAACCCCGGCCAATACGAGGAGCTGGGAGCGAAGATCCCTAAGGGAGCAATCCTTACAGGGCCCCCTGGCACGGGAAAAACTCTGCTGGCAAAGGCCACAGCTGGGGAGGCAAAGGTTCCCTTTATCACAGTCTCCGGCTCAGAGTTCCTTGAGATGTTTGTTGGCGTTGGCCCCTCTAGGGTACGTGACATGTTTGCGATGGCGCGCAAGAATTCTCCGTGCATTCTCTTCATTGATGAGATTGACGCGGTCGGACGTAAACGTGGCGGTCGTAGCTTCGGTGGACACAGCGAGCAAGAAAACACGCTCAACCAGCTCCTCGTTGAGATGGATGGTTTCACACAACAGACAAATGTTGTGGTTCTTGCGGCCACCAACAGGGTTGACATCCTTGACCCAGCTCTGCTACGACCTGGTCGCTTTGACAGACAGATTTTCGTCCCCTTGCCAGACATCAAAGGACGAGCCTCCATATTTAAGGTGCATTTGAAATCGCTGAAGACGGAAATGAACAAGGAGGACCTGTCAAGAAAGATGGCAGCCCACACTCCAGGCTTCTCAGGAGCTGACATTGCCAATGTGTGTAACGAGGCGGCTCTGATTGCTGCCCGAGACCTCAACACCAGTATCCATAAGCAACACTTTGAGCAGGCCATCGAGCGTGTCGTTGCTGGTTTGGAGAAGAAGACCCAAGTGCTTCAGCCAGAGGAGAAGAGGACAGTGGCCTACCATGAGGCTGGCCACGCCACTGCCGGCTGGTTCCTGGAGCACGCAGACCCACTGCTCAAGGTGTCGATCATCCCCCGTGGCAAGGGACTGGGCTATGCACAATACCTTCCCAAGGAGCAGTTCCTGTACACAAAGGAGCAGATGTTTGATCGCATGTGCATGGCACTAGGTGGCCGCGTTGCTGAGAACCTCTTCTTTGGTCGCATTTCATCTGGAGCACAGGATGACCTTCAGAAGGTCACAAGATCTGCATACTCGCAGATAGCCCAGTTGGGCATGAGTGAGAAGGTGGGCAACGTGTCCTTTGACATGCCCCAGCAAGGAGACATGGTGCTGGACAAGCCATACAGCGAGGCGACAGCCCAGCTGATAGATGAAGAGGCTCGCAATCTTATCCGTGAAGCCTACGAACACACCAAGAAGCTTCTTGAGGAGCACAAGGATGATGTAGAGAAGGTGGCAAAACGACTGCTGAAAAATGAGAAGTTGGACAAGGATGACATGGTGGAGCTGCTGGGACCTCGGCCGTTCGCTGAGAAGACAACGTATGAGGAGTTTGTGGAAGGCACTGGTTCATTTGAGGAGGATACATCTCTACCGAAGGGACTTCAGAACTGGAACAAGGGTGCGGACGAGGAGGGAGGGGATGAGGACGAGGGAAAGAAGTCGGCCTCATGA

Transcript

RPACG00191.1

GTCCATAAGGTTTTCCGCAGGTTCATAGACTTCATGCATTATCACGACGGTGTGGCAATTTGCTGGGTTGTTGGAAGTCACGTTTTGATATGATTTAAACATGGTGCATAAATATATTTCGTTAGCCAGAAGTGGCGACCGACTCGTCAATTGTCTGCTGAAGTCAAATTGCTCAAATATCGAGCTTCGTCGAAGTCTGCATCGATTTGTGCGATTGACACAATCCACACGAATCTCGTCACTACTGAAGGAATGGAACATACTGCGAAATGATGTACCTAAGGGGTTTGAGAAGTATTTCCCCAGCGGCAAGAAGGGTGCCCAGTCAAAAACACCTCCCAAAACAACATCAAAAGATGCCCCAAGAGACCCTCCATCAAGGAGCAGCGGAGGAGGGAAGTCGTCTGACAGGAAGTCGGGCATGGAATTCTCATTTAACTTATCAAAGACATCAAAGTCAAGTTTTACTGATCCAAATGATCCCAACAACAGGATGATCTTGGGAATCATTACAGGTGTAACAATCCTAGGCATGATTGGACTTTATCAGGGTCGCTATAAGGAAATCACCTGGAAAGACTTTTTGACATATTACTTGAGTCGTGGTGTGGTCGAGAGGTTGGAAGTAGTGAACAAGAAATGGGTGCGAATCAAGCTAGTGCCAGGAGCTCAGGTTGATGCATCGGGAGTGATCTGGTTCAACATTGGCAGTGTGGAGAGCTTTGAACGCAACCTCGAGAATGCCCAGGCAGAAATGGGCATGGAAGGATCCGACTTCATCTCCGTCGTCTACAAGACAGAGACAGAGATGGCCAGCATGCTGGGATCAGCACTCAATATCATCTTGCCACTAGCACTCATTTTCTGGCTCATTCGACGGTCTTCAGGCATGATGGGGGGTGGAGGTCGGCCAGGTGCTGGAGGCAGTGGGGGAGCAGGTGGCATGTTTGGCTTCGGGCAGACCACAGCCAAGATCATGAAGGATGATGTTGGAGTGCGCTTCAGGGATGTTGCAGGCTGCGAGGAGGCGAAGGTGGAGATCATGGAGTTTGTGAACTTCCTCAAAAACCCCGGCCAATACGAGGAGCTGGGAGCGAAGATCCCTAAGGGAGCAATCCTTACAGGGCCCCCTGGCACGGGAAAAACTCTGCTGGCAAAGGCCACAGCTGGGGAGGCAAAGGTTCCCTTTATCACAGTCTCCGGCTCAGAGTTCCTTGAGATGTTTGTTGGCGTTGGCCCCTCTAGGGTACGTGACATGTTTGCGATGGCGCGCAAGAATTCTCCGTGCATTCTCTTCATTGATGAGATTGACGCGGTCGGACGTAAACGTGGCGGTCGTAGCTTCGGTGGACACAGCGAGCAAGAAAACACGCTCAACCAGCTCCTCGTTGAGATGGATGGTTTCACACAACAGACAAATGTTGTGGTTCTTGCGGCCACCAACAGGGTTGACATCCTTGACCCAGCTCTGCTACGACCTGGTCGCTTTGACAGACAGATTTTCGTCCCCTTGCCAGACATCAAAGGACGAGCCTCCATATTTAAGGTGCATTTGAAATCGCTGAAGACGGAAATGAACAAGGAGGACCTGTCAAGAAAGATGGCAGCCCACACTCCAGGCTTCTCAGGAGCTGACATTGCCAATGTGTGTAACGAGGCGGCTCTGATTGCTGCCCGAGACCTCAACACCAGTATCCATAAGCAACACTTTGAGCAGGCCATCGAGCGTGTCGTTGCTGGTTTGGAGAAGAAGACCCAAGTGCTTCAGCCAGAGGAGAAGAGGACAGTGGCCTACCATGAGGCTGGCCACGCCACTGCCGGCTGGTTCCTGGAGCACGCAGACCCACTGCTCAAGGTGTCGATCATCCCCCGTGGCAAGGGACTGGGCTATGCACAATACCTTCCCAAGGAGCAGTTCCTGTACACAAAGGAGCAGATGTTTGATCGCATGTGCATGGCACTAGGTGGCCGCGTTGCTGAGAACCTCTTCTTTGGTCGCATTTCATCTGGAGCACAGGATGACCTTCAGAAGGTCACAAGATCTGCATACTCGCAGATAGCCCAGTTGGGCATGAGTGAGAAGGTGGGCAACGTGTCCTTTGACATGCCCCAGCAAGGAGACATGGTGCTGGACAAGCCATACAGCGAGGCGACAGCCCAGCTGATAGATGAAGAGGCTCGCAATCTTATCCGTGAAGCCTACGAACACACCAAGAAGCTTCTTGAGGAGCACAAGGATGATGTAGAGAAGGTGGCAAAACGACTGCTGAAAAATGAGAAGTTGGACAAGGATGACATGGTGGAGCTGCTGGGACCTCGGCCGTTCGCTGAGAAGACAACGTATGAGGAGTTTGTGGAAGGCACTGGTTCATTTGAGGAGGATACATCTCTACCGAAGGGACTTCAGAACTGGAACAAGGGTGCGGACGAGGAGGGAGGGGATGAGGACGAGGGAAAGAAGTCGGCCTCATGAGGCGTGGCTGCCTCAGCCTGGGACTTGTGAACATAATCTCGCACAGGGAATGCACAGCAAGTCTGTGGACTCAAACAAGTGGTGACGCTGTCACGTATGCTTGTAACTAGAGTGGCTCGGTGTCATATGAACAGCTTACCAAACATTGGAATTTTGGCAACAATGTACACTGAATGTATCATGAATGAATTGCGTTTTCTAAGCCCTCTTATAGGCAATATTTTGTGGTGATATATCAATTCACCTGAAGATAATTTGAATGGTCGGTTTTGCATCACAGTGTGCTTAGGTTGAGTCGTCGCCTGCTCAATGCAGTGTAGTGTGCACATTAGATAGACTGGACGAGTGGCATATTTGGGCTTGTTTTGGCAAGCACAAGTAATGTGGATATTTCAGCATCATGAAACTAATTCTTTACATACAAAAATAAAAGAACTTGTGAATGTATGTCACTTCCTTGTGTATATTGCAATAAAACGATGGAGAAAAATCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000192	Domain	Aminotransferase class V domain	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR020578	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR024169	Family	Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21152	AMINOTRANSFERASE CLASS V	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004760	Molecular Function	L-serine-pyruvate transaminase activity	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0008453	Molecular Function	alanine-glyoxylate transaminase activity	Interproscan
GO:0019265	Biological Process	glycine biosynthetic process, by transamination of glyoxylate	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00191.1 global RNA-seq network