Gene detail

Detailed information of RPACG00148.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00148.1	TUBULIN MONOGLYCYLASE TTLL3	tig00000002	472947	475512	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG00148.1

ACTACTGAAACTGACACAACGAGTGTTCCAATAGAGACTAAATCTGAGACACAACCAACCACAACTACAGCTACCACAACTACTGAAACTGATACAACGAATGTTCCAATAGAGACCAAATCTGAGACACAACCAACCACAACTGCAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACATCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACATCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTACTGAATCTGATACATCAAATGTTGAAATAGAAGCTACGTCTGATATATCATCAACGACCACAACTACCAAATCTAGTGAAACTGATTCAAAGGGAGTTGAAATAAATATTATGTCTGAGATACAATCTTCTTCATCAATAGCTACCACATCTACTGAGACTGATACAACGAGTGTTGTAATGGAAACTACATCTGATATACAACCAACGCCAACAACATTTACCACATCTAGTGAAACTGACATAAGAGGGGTTGAAATAGAAACATTTTCTGAGAAGCAACCATCTACAACAACTGCTGCCAATACTACTGAAACAGATACAACGAGTGTTGAAATAGAAACAATATCGGAAATACAACCATCGACAACAACATCTACTATAGCTATTGAAGCTGATATAACGAATGCTGAAATAGAAACAACATCTGAGACACAACCATCCACATCAACAACTACCACAACTACTGAAACTGATACAACGAGTGTTGAAATGAAAACAACACCTGAAATACGACATACCACAACAACAGCTACTTCAGCTGTTGAAACTGATACAACGAGCGCTGAAATCGGAACAACATCGGAGATACAACCAGACACAGCAACAGCTACAATTAATACTATTGAAACCGTTACAAATGTTGAACCGGAAGCAACATCAGAAATACAACCGACCACAGCGACAACTACTACAACTATTGAAATTGATACAAAGAGTGCTGAAATAGAAACAACATCGGGCATACAAAGAATTAAAACAACAGCTAGCACAACTATTGAAACCGACGCAATAGTTGTTGAAACAGCAACGGACTTACAAACAGCGAATAATGGATCTACCACATCCATTGAAACAAACCGATCACCCATTTATGTTGTTGCACATACATATGAATCAAAAACGTCATCGGTTGACAATGAAACACAAGCAACACCCGTATCGGCTCTGGCCGAAGATGACGATACCACATCAACGAGCGCATCCACAGCATTATCTGAACATCAGACAAATTATACAAAAACGCAACCTTTATATAACAGTACATCTCCTCCTGAAAAAACGTCAACTTTGCAAAGAAATAGTATATCTTTTGTAAGTGGAACGACATCAGTTGAGGTAGTAAAATCACGACAGTCTCACACTCCATCGGTCGCATCTGTGCCTCTACTGAATATCTCACGATCCAGCCCAGCTGCTGCAAACACTGACTTGCCAACAAGTAAAATATCGCTGACATTTAATCGGACAACGTTCCCAATAAAAACAATTGAAAGGACGATTGTAACAATGCGTGATGTCAAGAGTATTACTAAGAATATACCGTCTACCACTCAAAACTTGCCGTCTAACACTCAAGCAGTGCCGTCTAACATTCAAGCAGTGTCGTCTAGCCCTCTAGCTGTACCGTCTAGCACTCTAGCCACGTCGTCTAGCACTCTAGCCACGTCGTCTAGCACTCCAGCCACGTCGTCTAGCACTCTAGCCACGACGTCTAGCACTCTAGCCACGTCGTCTAGCACGCTAGACACGTCGTCTAGCACGCTATCCACGTCGTCTAGCACTCTAGCCACGTCTTCTAGCACTCTAGCCGTGCTGTCTAACACTAACGTTGTGCCGACAACATCGACTCGTGACAATGACGAACACAACATGCATTTACCATCAACTACATCGCGCAGAGAACTTGTATCTACTGTGCGAGAGGACACTACTGTTAAGACAACTCCGATCATAGATCAAAGTTCAACGTTGCGGGCTACTTTCGTTTCGACACAAGGCACAACGACAGAGTTTCCACCGACCAGTCAAACCACAACGGTGTCCTTCTCCACGGTGGTAACAACTTTACCTATC

Transcript

RPACG00148.1

CAACTACTGAAACTGACACAACGAGTGTTCCAATAGAGACTAAATCTGAGACACAACCAACCACAACTACAGCTACCACAACTACTGAAACTGATACAACGAATGTTCCAATAGAGACCAAATCTGAGACACAACCAACCACAACTGCAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACATCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACATCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTAGTAACACTGATACAATAAGTGTTGAAAAAGAAACAACATCTGAGTCACAACCAACCAAAAGGACAGCTACCACAACTACTGAATCTGATACATCAAATGTTGAAATAGAAGCTACGTCTGATATATCATCAACGACCACAACTACCAAATCTAGTGAAACTGATTCAAAGGGAGTTGAAATAAATATTATGTCTGAGATACAATCTTCTTCATCAATAGCTACCACATCTACTGAGACTGATACAACGAGTGTTGTAATGGAAACTACATCTGATATACAACCAACGCCAACAACATTTACCACATCTAGTGAAACTGACATAAGAGGGGTTGAAATAGAAACATTTTCTGAGAAGCAACCATCTACAACAACTGCTGCCAATACTACTGAAACAGATACAACGAGTGTTGAAATAGAAACAATATCGGAAATACAACCATCGACAACAACATCTACTATAGCTATTGAAGCTGATATAACGAATGCTGAAATAGAAACAACATCTGAGACACAACCATCCACATCAACAACTACCACAACTACTGAAACTGATACAACGAGTGTTGAAATGAAAACAACACCTGAAATACGACATACCACAACAACAGCTACTTCAGCTGTTGAAACTGATACAACGAGCGCTGAAATCGGAACAACATCGGAGATACAACCAGACACAGCAACAGCTACAATTAATACTATTGAAACCGTTACAAATGTTGAACCGGAAGCAACATCAGAAATACAACCGACCACAGCGACAACTACTACAACTATTGAAATTGATACAAAGAGTGCTGAAATAGAAACAACATCGGGCATACAAAGAATTAAAACAACAGCTAGCACAACTATTGAAACCGACGCAATAGTTGTTGAAACAGCAACGGACTTACAAACAGCGAATAATGGATCTACCACATCCATTGAAACAAACCGATCACCCATTTATGTTGTTGCACATACATATGAATCAAAAACGTCATCGGTTGACAATGAAACACAAGCAACACCCGTATCGGCTCTGGCCGAAGATGACGATACCACATCAACGAGCGCATCCACAGCATTATCTGAACATCAGACAAATTATACAAAAACGCAACCTTTATATAACAGTACATCTCCTCCTGAAAAAACGTCAACTTTGCAAAGAAATAGTATATCTTTTGTAAGTGGAACGACATCAGTTGAGGTAGTAAAATCACGACAGTCTCACACTCCATCGGTCGCATCTGTGCCTCTACTGAATATCTCACGATCCAGCCCAGCTGCTGCAAACACTGACTTGCCAACAAGTAAAATATCGCTGACATTTAATCGGACAACGTTCCCAATAAAAACAATTGAAAGGACGATTGTAACAATGCGTGATGTCAAGAGTATTACTAAGAATATACCGTCTACCACTCAAAACTTGCCGTCTAACACTCAAGCAGTGCCGTCTAACATTCAAGCAGTGTCGTCTAGCCCTCTAGCTGTACCGTCTAGCACTCTAGCCACGTCGTCTAGCACTCTAGCCACGTCGTCTAGCACTCCAGCCACGTCGTCTAGCACTCTAGCCACGACGTCTAGCACTCTAGCCACGTCGTCTAGCACGCTAGACACGTCGTCTAGCACGCTATCCACGTCGTCTAGCACTCTAGCCACGTCTTCTAGCACTCTAGCCGTGCTGTCTAACACTAACGTTGTGCCGACAACATCGACTCGTGACAATGACGAACACAACATGCATTTACCATCAACTACATCGCGCAGAGAACTTGTATCTACTGTGCGAGAGGACACTACTGTTAAGACAACTCCGATCATAGATCAAAGTTCAACGTTGCGGGCTACTTTCGTTTCGACACAAGGCACAACGACAGAGTTTCCACCGACCAGTCAAACCACAACGGTGTCCTTCTCCACGGTGGTAACAACTTTACCTATCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan
IPR051437	Family	Tubulin tyrosine ligase-like monoglycylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45870	TUBULIN MONOGLYCYLASE TTLL3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003341	Biological Process	cilium movement	Interproscan
GO:0005930	Cellular Component	axoneme	Interproscan
GO:0015630	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0018094	Biological Process	protein polyglycylation	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0070736	Molecular Function	protein-glycine ligase activity, initiating	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00148.1 global RNA-seq network