Gene detail

Detailed information of RPACG00143.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00143.1	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	tig00000002	396630	398738	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG00143.1

CCAGCAATGAAAGCTGATCCAATGTGGACAATGGGCGTGTCTGGAGTAAAGACAGAGTTGAAGAACACCTTGCTCTGGGCATACGCACAGAAGTAGATGGCCCTGAAAGAGAAAGCCCCCAATTAGAAATGCTACATAACACTCACAAACATAGCTACAGCAGTATGGCTGGTGTTCACAGGAGAGTCTTTCTATACTGATGGTGATGTATGTGTTTTATTGTGTAACTTGTTGTAAACTATCTCTATCAGGTTGCAACTAAGATTGCATCACTTTAAACACATCACATACAGGCATACCAACTGGAATACGCACATTACATTATTACAATAGTAGCATAGAAACTTGCTGTGTAGGTTTTTTGCACGTGAAATCGTTGGACTTGTAATGTAAGACCCTATGTGTACTATCATTCAAGCTGCAACAACAACAAACTGTGTTTGGTATTATTTCACATACTGACTGTCGACAACGAAGAATCAGACTTTGAAAAGTACAAATCACTTAGTCGGTGTGCGAATCTACGATGGGCGCTGCCATGTTTACCATGGTTACGCTGAATGCCTTCCTCCGATTTAGTCACCCCAGCAGCCATCTTGATCGCGTAGCAGCTGCCATCCGAAAACAATGTGGAGGTTTTTGACTGCAACAGCTGACGAGAAGATGCCGACTCTAGCCAGAGCCAGCTCTCCATCATTGCCTTAGCATCTAGGGTTGGCGCAGCACGTGAACCATTAACATTCCTAGCCTGTCAGAAGACGCAGAACAGGGGCAAGTCGAACGTCAACGGGATGGTACCCTCGCTTCAAAGCCACAATCGAACTCACTATGGCGATTTCTCCTCAGACCCAGGACCCACATCTTGTGAAGGAACCTCGCCCATCCCACAGACTACAAGCCTTCCTTAAATTTTTCCTGTTGTACCCATGTTCCACTGACAGAGCTGTAAGGTAGCTGGGGTGGCTAGTCTACACTATTTTTGAAATGCTTTTAATAGTGACAATTAATCACTGAAGAAACTAGCTGAGGGTCCAATGTTGCCTACACATTTTTTCATATCATATTTTTACATATGTAAAACAATACATAGTATGGAGAAACTGTATAATTTCCTTGCTGCTATTGAAGACAATAACATCAGTATTGGAATGTGTTTCATGCTTGATGTGTTACAGTATATTTTGTCAAGTTACTTGTTTGAAAAAATTTAATTACATTTATAAAAATGAAAGACGATCTCATATGTGGTCCACTCTCTTTCTTGTATCTCTGATCTCATCCATCTTGTGTGGTTTACTTCTCTTTCTTGTATCCCAGATCTCATCCATCTTGTGTGGTTTACTTCTCTTTCTTGTATCCCAGATCTCATCCATCTTGTGTGGTTTTCTTCTCTTTCTTGTATCCCAGATCACATCCATCTTGTGTGGTTTTCTTCTCTTTCTTGTATCCCAGATCTCATCCATCTTGTGTGGTTTTCTTCTCTTTCTTGTATCCCAGATGTCATCCTATCTTGTGTGGTCTTCCTCTCTTTCTTGTATCCCAGATCTCATCCATTTTTGTGTGGTCTTCCTCTCTTTCTTGTATCCCAGATCTCATCCTTTTTTGTGTGGTTTTCTTCTCTTTCTTGTATCCCAGATGTCATCCTATCTTGTGTGGTCTTCCTCTCTTTCTTGTATCCCAAATCTCATCCATTTTTGTGTGGTCTTCCTCTCTTTCTTGTATCCCAGATCTCATCCATCTTCTCTCTTTCTTGTATCCCAGATCTCCTCCCTATCATACATAGTCTTCCTCCTTGTCACTTGCCTTCACTCACTCTGATCATCCCAAACTTGCCCAACCTGTGATCTACAGCATGCACTGTCCAAAGTACGAAATCTTTTGTTTCAAACAAACACTTTTAATGACAGATTTTTGTTCCTCTCACTGTCTACAGAATTTGAAGCCTGCTTGTCTGTCTGTTTGTGTCCTTTGCTTCTGGTTATTGGTACATAACTCACATCCTTAAAATTGCATTGACTTTGTGAGGGCGATAGACACTTTTCATATCTCTTTTCTTATCCAAAATACCCTTGCATACTTGGCAATATTACGGCACCATCGCCTCATTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00478	IMPDH	IMP dehydrogenase / GMP reductase domain	Domain	Interproscan
PF00571	CBS	CBS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000644	Domain	CBS domain	Interproscan
IPR001093	Domain	IMP dehydrogenase/GMP reductase	Interproscan
IPR005990	Family	Inosine-5'-monophosphate dehydrogenase	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR015875	Conserved_site	IMP dehydrogenase / GMP reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11911	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003938	Molecular Function	IMP dehydrogenase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006164	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0006183	Biological Process	GTP biosynthetic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00143.1 global RNA-seq network