Gene detail

Detailed information of RPACG00120.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00120.1	IKB KINASE	tig00000001	2572638	2590211	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG00120.1

GTATGATTCATTGTCGTCGAAACATACACAATTCGAATTACATACGTCCCGCTGGTGCATGTGTGGATAAGGCAGATTGAGCCACTCGTCCGCTGAAGACAGTTGGCTGTCCTTCAACACGAAGTTGCTGGCGGTGTTGTTTCCGTTAACGTAAGACTGGAAACCCGGACACGACGCACGGACGAGTTGGACTGGGGATGCCACGGTGACAACTTTGCGTGTCATGAGAAGCGGGATTCAAACATCAACGAAGCGACCAGTCAGCAGTAACGACAGACGAGCCGTGCCGTTGGCATGAGGACAACCGTGTCGAGATCGCCTCCAACAGCGACCCGCCCTGCGCATACTGTCCAATCTTCACGTCCGGATCGTCCCCGAGGGCCACGAGGTGAACCCGTAGGAGTAGACGAATCGACAGCACGTTGACGTAAGCACTCCACCGAATGTTCACTCAATGCCACCATTAACGTGAAATGTCGTCGGCTAATCGACATTGGCATGCTTGATGGAATGAGACGTCAACACGTCATGCGTTAATATCTTCAGCACTATATAACCCACGGGTGAACGAGAACAATATCGGTTTTGTGTCAGGCCGCTGGGTGGAAATCGCGGGCGTTTGTTGGCGGTTTCTTGGGAAATCGGCGCCGGACAACATCGAAGCCGCCAGAGGAGTTCCGCCGGCAAAGGAAGCGTAAGCCCAGCGGCCATCTATGTTAAGAGGCTAGTGACCAGCGTCAAGGCTCCACTCTTTGTGTGCGGAAGTGACATGGTCCACACGTGCGCAATGGGACTACTGCGTGACAAGACGATTCTATTTGTGTAAATGTTTGCCCTTTTCGCACGCCATCCGTGATTGTTGGCATAGCTATGGCGCCGTTGGCTTCTCCGGAAGTGCATGAGTCAGACCGGAAGCCAAACTGGAACGTCTTGCGGACTTTCGATTTGACATTGCATTTTGACGACGAAACGCTAGGACACGACGAGACGGGATGCTACCTGTGTCTGCTCGGCTGTCGGAAGCCGCTCTACGGCGCAGGCCAGGTCGTGTCAGGTCACATGGTCATTCGACCTGTACGGAATATTCTCATATCAGGAGTGTCTGTGATATTCGGCGGACGCTACGTGACAAAGTGGAAGGAAGATCGGACCACTTGGGGCAACAACAGCCTCTTTTACGAGGAGGTAGTCTACGTGGTCGAACAACGAGAGACAGAATTAGACGGCCAACGGTACTACCGCTACGACTTCGAATACCGACTTCCGGCGGATCTTCCCTCGTCGCTCAAGTCCGCCGATGGGAAGCTGGTGTACTGTGCACGGGGCGTCGTCCACGCGCAGGACGGAAGTGACCTATATACGAACGCAAGACGGTTCCGCGTGTGGGCAACAGTCGACATAGGCCGCCTCCCGAGCAGTTTCCACGATCCCGTTGAACGGGCAGAGGAGAAGGTGTGTAAGTCGTGGCTCACGGGGGACGACCGTATCCGTGCTAAGTTGGTTCTAAACGCCCAGGCAGTCGTGCCGGGAGAGCCGATCATTGCAACGGCGACCATTGACAATCTGACGTCCCGGGCCGTCGGCTATAGCATCACTTTCCAACAGGTGATGATTTTCAGTGCGATACTGGCTTGCGAGAATCTTGGTAAACATACAACGCCGGTGTACCACAGACGACGCCACCGCAAAGAGACAACGAAAGACTTGGCTTCTAGCGGCGTTGTCGCGGTGTCACCTCACACGGCAATCACCGCTCGTCGTATCTTCTCCATTCCACGTGCACTCCTACCTTCGTCACAAAACCACATCAACATTCCGCATCCGTTACGTAACCATGGTGACATTATCACGCCGGAAATATACGTCAGCTACGTCGTAAAGCTCACAGTGACGGCAGAGAGTAGCGGCAGCGAGCTAAATATCCCTATCGAGGTTGATATCGGAACAACGGACCTACGTTCACAACAGACCAAAACGGACGACGCAGCGTCGACAATTGAAACAGAATGCAGCATGTATTCGCACAGCCTCTACTCGCATTCCGGCATATTGTGAAGACTGTGATTTCTTAAGCATACAGCTTGTGATTTATTGTGACAGCCATATTGACAATGGTGCATTTTCACATTCGGCGCGCGCGTGTGTGCGCGCGCATGCTTATAGGGGAAGGCATAGTTAGTTGTGCCATTTTGCATACTTTTTATATTTGAATCACAATCAAGAGGTTATGTAACAATCTAATTAATACACAATAATCTATTATTATTCTTAGATAATTTGTGATAAAAATAATAGATTTGGTTATTTATATACCTTTATATAGATAATTCCAAAAAGTAGGTAAACTCGCATTTTATATGATACAAGTTGAGCCATTAAGCAGGATGAGTCGAGCCACATTGTAGCGTACGTGGAATCACAGTTCTTTATTTATATATATATATATATATATATATATGTTCCTGCAAAACACAGTTAAAAAGACTTGTTGGTCGCTTGATAATGTAAATCTACATGACGAGGCATTACATTAATTTAATGAGCCAACACTTAGTAACAATCCGGCGCAGCTGATCATGTGGAACTGTGTTGTTCTGTATATTTCGAATGTCCGAGTTCCAGAATGTGCAAGGGAAGATGATTAACGTTTGCATTCACCAACACTTTCTGGTCAAGACAGTTTCGTTATGATATATTCTCGAGGAAAACAGCACTCGTCTTCATTATTGAATGCTAATGTTGGTTTATTGTGGTATGCGTCTCCATTTCCCTTTACCAGGAGACGCCCTTAGGAGATTCCACTCTCATCTTTCTCCATGTTTATTGTTAAAAGACGTTCTTAATGTTTGTTCCTCTTTCTGTATTGTTGGTTGTATGAGTTGTACTATTGCGTTGTTGTACAATATCTAAACAGGGACTTCTAAGAGGCAGGGTGTTTGTCAAAGAAAATATGGTATACGTATTGTGCATCGTATGAGTTCAGATATTAAACGTAGGCTCACTGAAAACACAGCAACCTTTGTAGCGTATTTCTGAACACGTATGAGTTGGGAGCCACCTGCATGAATAGTTCAGTCCCGGTTCACCTAAACCTGCACTGAACGGTTCAACTAATACTCCCGCCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF18394	TBK1_CCD1	TANK-binding kinase 1 coiled-coil domain 1	Coiled-coil	Interproscan
PF18396	TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR041087	Domain	TANK binding kinase 1, ubiquitin-like domain	Interproscan
IPR041309	Domain	TANK-binding kinase 1, coiled-coil domain 1	Interproscan
IPR051180	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969	IKB KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0018105	Biological Process	peptidyl-serine phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00120.1 global RNA-seq network