Gene detail

Detailed information of RPACG00110.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00110.1	ADP RIBOSYLATION FACTOR-RELATED	tig00000001	2340542	2357643	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG00110.1

AGTCACGTGACTTCGTAAAAGACAAATGTCGAAGAAATTGAAAACATGAAGTCGTCGAAGAGGATCTAGGGTATTTGACACGAAATGATCGAAAATGAATGACGAATGTGACGTCGAGGCACTCATGCAAGGACAACCGCAAGTTACAACGGTCACACTCCTAGGGGAGACGCGCAGAACGTTTGTTGGACTGGGATGTATGGAGTGGTTGTTCCTAGCTGTGTCAGTGGTCAACATTGTTGCCACAATTGGCCTGACCATTGAACGAATAGTTGTCATCGTGCAGTTTGACCGGAGTGACCCTGACTTCACATTTGCCCTCCTGTTGCTCATCAACGCAGTGTTCTGTCTCATATATGCAATCCATGGTGTGTTGCGGGAACGACAGTATGAGTTATACATCCTCGTGGGTGCTATTTCTGTTGTGCTGATCTACTGCATCCTTGGCTACAGCATTAACACCAAGAAACGCACTCAGATAAAGCTCATTCGTCTGATACTGGCAGTCATTTTGGCTCCGTTCAACATTGCGCTTGCAATAGTGGTGGCAAAGAGATTTCGCTGGCTTCAGTTTTGGATTGTTGGTGCATCCGAACAATTTCAAAACATGTACAGAGAAGTGGCTTGCTTCATGGACTTGCTGAAATTTGACTTCCAAGTTGCTTTAAGCTTTGTGATATTGTCTTTGCGAGATGGAACATCAGTGTCTATTCCCGAGACTATCACCCTGGTGCTTGGGCTTGCTGTCTCCTTGACTCTTCTGCTTCTTGGCTGGTTCTCGATTCGTCTGGAGTTGAAGTGGTGTGTTGGTGTCTTTACGGTGCTCTGTTTTGTTGAACCTGCATACGTTATCATCAAATTGGTCCAAATTTTTGGAAGTCTTCCATTCGGGAAAGGCTTGATGATCATTGGTTACTCTACAATAACTGCAGGTTTCCTGGCTCTTCTGGTACGGTTCGTTCTAATGATAAAAACGTGCATAATCGTTAAGAATTTTGGAAAGGGCTTGAAAGAAAGAGTGTTCAGTGACGAGGCGAACGAACGAACAAGCCTGCTCACAGTGCCAGACAGACGACACCGCTGACAATTGGCAGCACTGGAGTTGTTGCACTGTACAGACGAAACCGACAGGTGAAAACACAGCGCACTAGACTTAAGTCTGTGTGAAAATGGATGCCGTATTCATGGATGGAGGCACGGGAGTTTACTAGTCAGCTTAATGTCTCCCCTTTGCATTACATAACTGTTAGTATGCTCTAGTTGCAATTACAGCATTGTTATGAAATATCATGAAGTTATTTTTTAACGACATGCATTCCAGTTTGGCACTACCAATCTACGAAATGGTACCAGAAATAGATAAATGAGTGGAAAATGTACAGCCACAACACTTAAAGAAATGCCCAATTCAGGTGTCACTAGTATCTTCATGCCTCGTTGTATCTCGGTGATACGTCGTATCATTTGAACGCTTAAGCTTACTGCTAATCTACAATGCCTATGTTTTTCTGAGAAGCGATAATGAAACAACACGTGTCTTATGCACTGTGAACAGAAATGTTTCGTTGTTGTTGCAACCATTGAGGCGTTTGCCTAGTCGGATTTGCATCTCGCTCATAAATATAAATCAACAGTGCAGCGATGTTAGTTTTGATTGTCTCAGTTGTTTCATTGATTTATATGATTGACAAAAGTTGAGTCCGTCTCAGTTGTTGTTTGGTAGTTTAAAAAATAGAAAGCTAACCTTTCATATGATAGCAAGACCGTTGGGATTGGGTAAGGCATAAAGACACTAGCAACTGTTGAATTATGTGTTTTCAATGATACTCCATATCTGTGGGTAAGTGTAATGCCAACAGACAGGACGAGAAAGCAATAATGACCCTCTGGCAAGAAAGCTGACTTTTGAATTCTACATGCATAGTGCTTATATCTGTCTATATATTCATGGTTTACAAACATTTTACATTGAATTGTAAATATTCTAATTAATGTTTGTTGTGTTTTATATACGTGGAAATTTATATATATACGAAGATATACTTATGGCATGTATATTTTTGATGTGGTAAGTTGTTGCTGTTAATTAAAGTATGTTTACAACCAAAATGTGGCTTTGTATACAATGTATTTTTATTGTATTTTTAAAATGACACTACTGTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025	Arf	ADP-ribosylation factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006689	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR024156	Family	Small GTPase superfamily, ARF type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005930	Cellular Component	axoneme	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0061512	Biological Process	protein localization to cilium	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00110.1 global RNA-seq network