Gene detail

Detailed information of RPACG00099.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG00099.1	CADHERIN-23	tig00000001	2141591	2152018	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG00099.1

GAAATGGCGGCGGTGAAGGTGTTGGTTTTGTGGGGGCTGTGTGTATCTAGCGTGATTTCATCGCCAAGTTCAGTTCCAGCTGTCATATGGACCAACAATCAGATGCACAAGTTTCCTTCAACCTTGGCAGGTCACTCGACCAGTGGAGATGTGTTTGCTGATTACATTAGCACAAGTCTTGCTGATAAGAAACAAAACCTTGTTGTCTTTCTCCAAGACAAGCTGAACGTGGAGGATTTGTCTCAGCATGCGGATGGGGACACATTCAAGAACCTCAAGTCCCTCGTAGGTTCACAAGTTTCAGCTCACCTGTCTGGCGTCAACACCCCGGCAGACGCTCTCGCTAAGCTCAGGCAACAATTTGCCGGCAGAGTGCACGAGGTGACGCCATCTACGAATGTCGGCAATCTGCCAATGTCAAATGAAGGTCATGACATGCTGGTCGTAAACTTGCCCCCGACAGAGAAGGGGCAGATAGAGGACACCCTCAAGAACAGCGACTCGATCATTGGCTCTGTGATTTCGAAGCTGCAAAGCGCCGGGAAGAAATACACCGCTGTGTACACAGCGAAGGATTCTTCACAGGTGGTGGATGAGACTTTGTACATGGGGCGCCACCTACTGGCCGAGGAGGAAAAGAGCACGGCGAATGATACGAACAAGGCGACGTTCCTCAATGTTTCCGGGTGCATCTTCTTCTATGCAAACAAGATAATATTGCATGTGAAAAAACACGATATGATGTTCACTCTGCCAGGCTATATAAACACTACCTATACGAACGGCGCATGTGAAGAGAACAACAACACCTGGTTGGAGCTGACCTATCCTGACGATCTGCCTGAGGGTTTGGAAGACTTCAGTCTTAGGATGAACTTTGAAAAAAAGAACTTCGAGTGGAAGAGCACCGACATGGTGCTCAGTTTCAAGGTCTACAACAGTTCCAGCAACGACACGGAGGGAATGAAAAATGTGACAGAGACGTACACGATGTCAGCCGACTTTCTGTTTGCTCCCAAAGGACACTGCTATCACTGCGGTGTCAGCAAAGAACTGAAGCATGACACCAACTCCACCAACTCCACGACAACAGTCATCTTCCAAGGAATGCAGGTGCAAATTGGAGATATACTAAAGAACAAGTTCGGTCGTTCCAATGACTGCATCGGCTTCTTCACGATCCCCATTTGGTCTGGCCTCATTGTCGGCTTGCTGCTTGTCAGCATCCTCTTCTTCGGCGTCGTCATGCTTCTCATGATGAACTCCATCGACCGGTTTGATGACCCCAAGGGAAAGACGATCACGGTGAACGTCACCGATTAAGACATCCAGGCAGTGAGCGATGTGGCATGCCTGTACACAAGGATTAGAGATCGTTCGCAAGACACCTGCAATCCTCGTTTTTATCAATACGTAACGGAAAGTATACTCAAGGAATTGTAAAGGAAAACGGTGCGAATGAAGGACCGAATAACCATCGGGATGGGATGTTTTGTGGAATTGTTTCTTCTTAAAATTGTCAAAATCACATCATTGGTGCAGATGAGAGAAAGCATGGACATGCGTTGTTCAATCGATGGTACTGTAGTCGTAGCTAATACTTGTATAGTTGTCAGTGGTGAATGCCGCAGTAGAACAGGTGCACAAATCATCGTCAAACCACTAACTTATGGAAATATACAGATTAAACGTTAGGTAAACTAGTTCTCCGTAGTACCGTCAACGTAGATGATTTTTACGGGAAATACTAACATCAATTGGTATGTTGACATGTCTAATTGCATGCATTTGTGCACATAACATGGGTGTAGAAGTAGCAGGAAGCAGCGCAAGGAAGGTGGAGATTGTCCGCATACTTGTGTCGATAACGACTCTGATGTGGCATGCTAATCCTGTTGTAGAAAACAACTCATTTGTAAGCAACGTGCAAGAAAAGAAAAAAGTCCTTGTTTTTCAGTCTGCGTGGTTACAAGGATCACTGTAAACATTCCGATGGGGGGAGCTAAGAAGTGACAGTGCACTGTTTGCACTCTGTATCAAATGTGTTCATGCTGTACGCTGTACGATACACGTCCACAGCAGATTGTTGGCAAAGTCGTGCTGGTGAACAAGTGTAGGAAATGTGTAAATCTAGATTAAATATGTAGTATGTATAGAATCTTAAGTGTCTAACAAATTGTTGATGCGCAAAAGTGAATATGACGTGTATTATTAGCAGCTTGACTAACATAATACAGCTGTAATTGTAAACTTGCACGTGTTGTATATAATGATGTATGTATGAAAGAAGTCACTAATAAAGCCAAAAGCTTATGTATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG00099.1 global RNA-seq network