Gene detail

Detailed information of Paelopatides60683 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides60683	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	utg95511	16867	36152	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Paelopatides60683

CAACATCGGATGGGTACTATAAAAATAACTGTACTATTTTTTACTAACTAATTACTTCGTTACACCCAACAAAAGTTACGGGACTGCAGTATAAATTTAATTGAACTGAAGAGATTTATTCATTGAATACCACAGCAGAAATCATGCCTAAGGTAAAATCACAGAAGAGATCGAGGACACACGACCAAGTGTATCGTCAAGGTATTCTCTTTAATACTGGAATTGGGCAACATATTTTGAAAAATCCTCTCATTGTTGATGCTATGGTAGATAAGGGCCTCCCACATAGCGGGCAAGGACAACGAGTTGGCAGACGCGTTGTCCAGGGGACGTGCGAAGGAGGGCGAGTGGGAGCTTGCTCCCAGGTGGACGAAGTGGCTGTTCACCGAGCTAGGCAGGCCACTCGTGGACCTCTTCGCTATGAAGGGCAACAGCAAGCTGCCCACCTTCTGCTCCAGGAGGTTCCACCCCCAAGCCTGGGCGACGGACGCAATGTCTTTTTCATGGAACGGACTGGACGCTTACGCGTTCCCTCCGTTCAACATGATCCACAGAGTTCTTCTCAAACTCAAAGCGTCGTCAGCCCGCCTCCTTCTCATTGCCCCGCTTTGGCCGCGCCAACCCTGGTTCGCGACCCTGCTGCACCTGGTAGTGGCCATTCCGAGAGTCCTCCCGGACAGACCGGACATAGTCTCTCAGGGGAGAGGCAAAATCCTCCACCCCAGGCCACAGGACCTACATCTTACTGCGTGGCGACTGTCCGGCGTGCCTTCCGAGCACACGGACTTTCTGCAGACGTTGCTTCCCTCGCAGCAGAATCTAGGCGATCCTCCACCTTCCGAACTTATGATTCTAGATTCTTCCGATGGTGCTCAGAGAATGCTACTACTACAACTGGTGCATCTCTAGAGCAGGTCTCCACCTTTCTCAAAATGCTGTTCGACGAGGGCAAGCAAGTCAGCACCATTAAGAACTATCGGTCGGCCATCGGCGCAGTCCATTTAGGCTTCGCCGACGGTTCTACGCCAGGTACGAACCGCGTCCTAGCGCACCTGGTAAGGGCTATGGCACTCCGCAGACCAGTAGTCAGGCTACTGGCCCCCTCCTGGTCCATCAACTCAGTACTGGAGGCGCTCGCGCGCCCTCCTTACGAGCCTATGGCGGAGGCTTCCTTACCAGACCTAACCCGAAAAAACCCTTTTCCTGCTCGCAGCAGCGTCCGCAAGAGGGATCTCTTCATCCCAGACATCAAGAGTTTCTCTTCGGTGGCAGAGGACAAACTCTGTTGCCCAGTCAGGGCACTGAAGTGGTACCTTCACAAGGTCAAAAACCTGCGCTCCTCCACAAGGTTATTTGTTCTTCCCAGAAGCCCCTACACGGCGGCTTCTAAGGATACCATTTCCCGTTGGCTGTCGGAGGTCATCTCGCCGCACGCGGACTCCAGAGCGAGGGCTCACGAGGTCCGTGGACAGGCAGCTTCCAGGGCTCTCTTCGCAGGCGTGCCCATTCAGGATATCCTGAAGGCGGCAGCCTGGAAGACCCCTGCTACCTTCGTCGCCTGCTACCTCACGGACACGCTGGCGGCCGAAGCTGCTTTTGGCCGCGCTGCCCTGGCTTCCATAAGAAATACAGAAACTGTTCTTGAAGTTGGGCCCGGTACAGGAAACATGACGGTGAAACTTCTGGAAAAAGCAAAAAGGGTAGTTGCTTGTGAAGTGGACCCTAGACTTGTGGCTGAACTCCAGAAAAGGGTTCAAGGAACACCATACCATAATAAACTGCATGTGATCGTCGGTGATGTTTTAAAGACGGAATTGCCATATTTTGATGTCTGTGTAGCAAATTTACCATATCAAATTCATCACCCTTTGTCTTTAAATTGTTGTTACACAGACCCTTCTTCAGGTGTGCAGTTCTGATGTTTCAGCAGGAGTTTGCTCAGCGTATGGTATGTAGCTAAACCTGGAGATAAACTTTACTGTAGGCTCTCAATAAATACACAACTACTGGCTAAAGTCAACCATCTCATGAAGATCGGTAGGAATAATTTCAAACCTCCGCCAAAGGTAGAATCGAGTGTAATCAAGTTAGAACCAATCAACC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00398	RrnaAD	Ribosomal RNA adenine dimethylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001737	Family	Ribosomal RNA adenine methyltransferase KsgA/Erm	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR020596	Conserved_site	Ribosomal RNA adenine methylase transferase, conserved site	Interproscan
IPR020598	Domain	Ribosomal RNA adenine methylase transferase, N-terminal	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000154	Biological Process	rRNA modification	Interproscan
GO:0000179	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-