Gene detail

Detailed information of Paelopatides60621 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides60621	NUCLEAR PORE COMPLEX PROTEIN NUP155	utg95126	54858	200759	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides60621

ATGTCTCTGGTTGCACCCTCCTTTGGTATGCTGACGGTGTCGATCCCGGCAGCAAACCAGCTGTTAATACAATCAGCAGGGCAAAAATTTGATGCCTTTCTTGTCAAAGATAGAACCTACCCAGAACTAACACATTTGTTAGGAGTTACTTCATCAGTTCAACCTACTGTGAGTGGAACCACTGATTGGGATTATCCTTCACTAGCAGCTCCATCAGTAGGTCTCTCAGAATTGCCACTGTTAACACCGATACGCCAAAGTCCGCTCCCTCCTGAGCTGATTGAACAGTATGCCCATATGCAAAGCAACTGTATGATGGGAGTGTTTCCTGAAATTAATAGAGCCTGGCTAACCATTGACACAGATATATTCTTGTGGAACTATGATGATGGTTCGGATTTGGCATATTTTGATGGTCTCAGTGATAGTATTATCAGCGCAGGACTGGTTCTTCCCAAACCAAATATTTTTCAAAATCACATCCGATTTTTACTTTGTTTGGCCACTCCAGTTGAAATTGTGTTGCTTGGTGTCAGCTTTACCCGATCACATGAAGATGTTGACATCAATGACTTTGGCCACTCTGAGATGCATCTTCTACCTGATCCACTTTTCTCTATACCATCTGACAACGTACACGTTCTCAGTGTAAAAGCTGCCAATAATGGGCGGATTTTTATGGCTGCCAAAGATGGCTGCCTTTATGAACTTGTTTATCAGGCAAGGGATGGCTGGTTCAGCAGGAAATGCCGTAAAGTCAACCATTCCAGCAGCTCCCTGTCTTTTCTGCTGCCTTCATTTCTTGCATTTACAACAGAAGATCCCATGGTACAGATGGATGTGGATGATACCAGGCACACTGTGTACACCCTCTCAGAAAAAGGAACTCTGCAAGTTTATGACCTGGGCACCGATGGGGAGTCAATGAGCAGAGTGTCGTACCTCACAAAGGCATCTATACTTCATCAAGCCATTCAAATAGCAAGGACAATCGATCGCACCAACTTCCATGAAATAGTCCACATCACAGCCATTAGAAGTAATGAGTCCAGATATATTCATTTTAGTAGCCATTACACAGTCAGTTCAGCCATGCTAAAAAGCCTGAGCCCGTCATCCAAGCAAGTGAACTTTAAGAGACGAAAGCAGGGTAGGAAAGGTGGGATACGAGCTAGATTGAGGAGACGTGCCAGTGTAAGGCTGTACTTTAGTACCAATCATTTTGATAGTTTTACCTACAAATCTTCTCAGAGGCCATCTACCCTGCTCTTAGTTCATGTCCGTCTTCCACCAGGATTTTCACCTAGTGCATCGACACAACGACCCACCAAGGTTCATGCTGCACACTACAGCAGAGGATCAACACTTCTCTGTACCAGCCAAGCAGATGGTGCCTTCTCTCTCTGGTGTTTGAGCCCTGATGCATTTCCTTTTCAAGCTAATTTAATGGAAACCCATACACATTATCCAATTGACACTTTTACCTGGGTGATAGCTGAAGTAAAATCACGTTCCACCATAGACTATGCAGTTGAGACGTCGAGGGGCACAAGACAACTTCTAGAACCTGAACCAAATCCTCCTGCAGTTGTTGAGCAGCATACTCAATCCTCATCAAAATATATATTACTTAGTTCTCAGGGTTCTTACGTGGTAACCAGACTACGCCCAGTGGACCAGCTGCGTCAACTGATGTTGAACAATTCAGGTCCTGATTGTACAGAGGTGGAAAACTTTTTCAGGCTCCACAAGGATGACCAGGCATGTGCTACCTGTCTAATCTTAATCTGTTCTCAAGATCCTGCAGACACCCAGGTCTCTGAGTGGGCCACCCAAGCCTTTTTTGCCTTTGGTGGAGAGGCAAAGTTACGGCTAGGTCTGGATCAAACCCAGCTGCCAATTTGTGGCCGGCATTTGGTAAGTCGGTTACTCTCCATTTTTCTACAATGTGATAAAATAGTCTGTCTCCTTCAGGTCTTTAAGCTGGAGTATAAACTGAAGAACAGGAGTAAAGATACTTAA

Transcript

Paelopatides60621

GGGAAGTGGCGGGAGTCCAACTACAATACTAAACTATAACCGTTTCAAGAAAACATGTCAAATCATCTTCTGGACTGAACACAGAGTTGCAACACAACACTACAAGAAAGATGTCTCTGGTTGCACCCTCCTTTGGTATGCTGACGGTGTCGATCCCGGCAGCAAACCAGCTGTTAATACAATCAGCAGGGCAAAAATTTGATGCCTTTCTTGTCAAAGATAGAACCTACCCAGAACTAACACATTTGTTAGGAGTTACTTCATCAGTTCAACCTACTGTGAGTGGAACCACTGATTGGGATTATCCTTCACTAGCAGCTCCATCAGTAGGTCTCTCAGAATTGCCACTGTTAACACCGATACGCCAAAGTCCGCTCCCTCCTGAGCTGATTGAACAGTATGCCCATATGCAAAGCAACTGTATGATGGGAGTGTTTCCTGAAATTAATAGAGCCTGGCTAACCATTGACACAGATATATTCTTGTGGAACTATGATGATGGTTCGGATTTGGCATATTTTGATGGTCTCAGTGATAGTATTATCAGCGCAGGACTGGTTCTTCCCAAACCAAATATTTTTCAAAATCACATCCGATTTTTACTTTGTTTGGCCACTCCAGTTGAAATTGTGTTGCTTGGTGTCAGCTTTACCCGATCACATGAAGATGTTGACATCAATGACTTTGGCCACTCTGAGATGCATCTTCTACCTGATCCACTTTTCTCTATACCATCTGACAACGTACACGTTCTCAGTGTAAAAGCTGCCAATAATGGGCGGATTTTTATGGCTGCCAAAGATGGCTGCCTTTATGAACTTGTTTATCAGGCAAGGGATGGCTGGTTCAGCAGGAAATGCCGTAAAGTCAACCATTCCAGCAGCTCCCTGTCTTTTCTGCTGCCTTCATTTCTTGCATTTACAACAGAAGATCCCATGGTACAGATGGATGTGGATGATACCAGGCACACTGTGTACACCCTCTCAGAAAAAGGAACTCTGCAAGTTTATGACCTGGGCACCGATGGGGAGTCAATGAGCAGAGTGTCGTACCTCACAAAGGCATCTATACTTCATCAAGCCATTCAAATAGCAAGGACAATCGATCGCACCAACTTCCATGAAATAGTCCACATCACAGCCATTAGAAGTAATGAGTCCAGATATATTCATTTTAGTAGCCATTACACAGTCAGTTCAGCCATGCTAAAAAGCCTGAGCCCGTCATCCAAGCAAGTGAACTTTAAGAGACGAAAGCAGGGTAGGAAAGGTGGGATACGAGCTAGATTGAGGAGACGTGCCAGTGTAAGGCTGTACTTTAGTACCAATCATTTTGATAGTTTTACCTACAAATCTTCTCAGAGGCCATCTACCCTGCTCTTAGTTCATGTCCGTCTTCCACCAGGATTTTCACCTAGTGCATCGACACAACGACCCACCAAGGTTCATGCTGCACACTACAGCAGAGGATCAACACTTCTCTGTACCAGCCAAGCAGATGGTGCCTTCTCTCTCTGGTGTTTGAGCCCTGATGCATTTCCTTTTCAAGCTAATTTAATGGAAACCCATACACATTATCCAATTGACACTTTTACCTGGGTGATAGCTGAAGTAAAATCACGTTCCACCATAGACTATGCAGTTGAGACGTCGAGGGGCACAAGACAACTTCTAGAACCTGAACCAAATCCTCCTGCAGTTGTTGAGCAGCATACTCAATCCTCATCAAAATATATATTACTTAGTTCTCAGGGTTCTTACGTGGTAACCAGACTACGCCCAGTGGACCAGCTGCGTCAACTGATGTTGAACAATTCAGGTCCTGATTGTACAGAGGTGGAAAACTTTTTCAGGCTCCACAAGGATGACCAGGCATGTGCTACCTGTCTAATCTTAATCTGTTCTCAAGATCCTGCAGACACCCAGGTCTCTGAGTGGGCCACCCAAGCCTTTTTTGCCTTTGGTGGAGAGGCAAAGTTACGGCTAGGTCTGGATCAAACCCAGCTGCCAATTTGTGGCCGGCATTTGGTAAGTCGGTTACTCTCCATTTTTCTACAATGTGATAAAATAGTCTGTCTCCTTCAGGTCTTTAAGCTGGAGTATAAACTGAAGAACAGGAGTAAAGATACTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08801	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004870	Family	Nucleoporin, Nup155-like	Interproscan
IPR014908	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10350	NUCLEAR PORE COMPLEX PROTEIN NUP155	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044611	Cellular Component	nuclear pore inner ring	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-