Gene detail

Detailed information of Paelopatides58167 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides58167	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	utg75449	297730	406355	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides58167

ATGAGCAAGAGAGGGCCGGGCAAGGGAGGCCGACAGGACGGGATGTCTAACCAGGACACTACCACAGAGAGCAGTGCCAGCAATGCAAACGAGTCTAACGAGGAGACATCACAAGGAGCCACAGCAGCATCCAATACTTCTGGAGCAGCCTCTGCACTAGCCACTGGAGGGGAAGGTGAAAGTGACGACTCCGAAGTCAGCAGACTTCAAGCTTTACTGGAAGCAAGAGGTACCAAGGCACAGCAGCTGCTGACAGGCCTTCAGGCCACGGGAGACGAAAGTCAGCAGTTGCAAGCCGTCATCGAGATGTGTCAACTCTTGGTCATGGGTAATGAGGACACCCTAGGGGGATTCCCAGTCAAGCAGGTGGTCCCTGCATTAATAACTCTACTGTCCATGGAGCATAATTTTGACATGATGAACCAAGCTTGTCGAGCCCTCACCTATATGATGGAAGCATTACCACGGTCTTCATCGGTGGTTGCTGGTGCTATTCCAGTTTTTCTCGAAAAGCTTCAAGTGATCCAGTGCATGGATGTGGCCGAACAGTCCTTGACTGCTTTGGAAATGCTCTCAAGAAGACACAGCAAGGCAATCCTCCAAGCTGGGGGTTTATCGGCATGTCTACTATACATTGAGTTTTTCTCCATCGTGGCACAACGTAATGCCCTGGCGGTGGCAGCAAACTGCTGCCAGAGCATCAGTCCAGATGAATTCCATCGGGTCTCAGACTCCCTCCAGCTGCTAACAGGAAGACTACAGCATTCAGACAAGAAGTCAGTGGAGAGCTGCTGTCTCTGTTTCGCTCGACTGTTTGACAACTTCCAGAACGACAAGACCCTGCTGAAGCGAGTAGCTTCACACGGCCTGAATGCCAATCTTCAACAGTTGTTGGTGATAACACCAGCAGTCATCAGTACAGGGACATTCATCATGGTGATTCGTATGATGGCGCTCATGTGTTCCAGATGCCCGGAGCTGGCAGTGGAACTTAACAGACAGAATATAGCCGAGACCATTAGATACCTGCTGATGGGAAGCCCTGATCAAGACAGTCACGAAATAGAGCTTGTCCCCAGAAGCCCACAGGAACTTTACGAAATAACATCTCTGATAAGTGAACTGATGCCTCGTCTTCCAACTGATGGTATCTTTGTGGTAGATGCTCTCCTGAAGAGGGGCACCACTCAGAGCACGGACGCCGCCTTATGGCAGTGGAAGGACGATGGCGGTATTTGGAGGCCATATAGTCAAATAGATAACAGAATTCTAGAGGCTGCTCACCAAGCAGGAGAGGATGAAGTCACCCTCTCGACCCTCAGCCGGACCTACACCATAGACTACAACGCCATGCAACAGATAAATGAAGATACGGGTAACGCCAGACAGGTTCAGAGGAGACCCAATCCTGCTGCAGCGGCCAATGCATCTGGTGCACCACAGGAGGCTGAAGAGGATGCTAGACTAACCCTCCTCAACCAGGATCAAGATTTGTCGGCATCCTTTATCAAAGCTCTTTTTGCTGTTCTTTACGAGGTCTACAGTTCTTCGGCGGGACCAGCTGTGAAGCACAAATGTTTAAAATCACTGTTGAGGATGGTGTACTTTGCCAAACCAGACTTACTTAGAGGAGTGTTACAAAATTTAGCTGTTTCAAGTCATATAGCTGCTATGATGTCATCTCAGGACCTGAAGGTAGTCGTGGGCGCCTTACAGATGGCGGAGATACTCATGCAGAAACTACCTGATATATTTCACGTCTTCTTCAGAAGAGAAGGTGTGATGCACCAAGTGAAGTTACTCGCAGAGGCCCCGATAGAAGCCGACAAGACCCCACCCACCAAACGAACGACCACCAGCAGTAGCAATTCTGCAGATGCATTTCAGACTCCGCCCCAAGATAACAATGATATTGAAATGGGGCTCAATTCTGATGGCGTAACACAAGGGAGACTCAGCGACCCGCTTAAACTGAAGAGGCCGCCAAAGAGAGTTTCTGGTCGTAAGAGTCGTCAGTCAAACTTGGACGACGTGAGTCTGTCGCATGACCTGACAGACACGCCCACAGGGAGGCCTCTGTCCGGTTCCAGCTCTCTCACGAGTGGATCCTCGAGAGCTTCAAGTTCGTCCAGAGCGTCTGGTGCAGCCAAAAACAAAGGAACACCTGCCAGCAAGAGCAGTAGCAACAGCTCTAGGACGTCCTTCCTTGCAAGTCTGAGTTTGTCACGCTGGGGTAAATCTCAGAATGCAGCACTCTCTAACCAGGGAACCCCACCATCGCAGGGCGGTGGCTTGCTGGGACTCCGAGCCAGTCACCTGCCGGACAGAACCCTAGAGTTGGCGAAACGGGAGGCGACTAATAATGCTCAAAAGGAGAAGGTCAAAAAGTGGATTAAAGATCAAGCTGTGAAGTTCATCAACCAGTACTTTGACAAGGAGGTCTCTTCAGAGAGCCACCCAGCTTTAACTCTCCTGAATAAACTCTGTGCTTCTGTTGATGAACTCAAACCAGAGCGGGGCGAATCTAATATCGATATGCTGCGGAGTATAGCGGATATTCTCACAGAGTCGGACGTTTCTGCCTTTGAGATTCTCCACAGCGGACTGGTAGGCAAGCTACTGACATTCCTAGCCAGTGGCTCTGGTAAAAACAGGGAAAAACGACTTCATCATTTTCTCCATGTTTTCTTAAAATGTCCATTACCAGCAGACACTCCGATTATACCGCTGGATATTGTTAAAGCCCCTTTCTTTTCCTTGGTGAACAAAGTCAACGGGTGCATCAGTCACCTGGAACAGTTTCCAGTCAAAGTTCACGACCTGCCTGGTGTGGAGGGTACCGGCAGCAGGGGTTCACAGGCTCTGAAATTCTTCAACACACATCAACTAAAGTGCCAACTAGAAAGACACCCAGCATGTACTAACTTGAGGAAGTGGCGTGGAGGTGCAGTCAAGATCGACCCCCTGGCCCTGGTGCAGGCCATTGAGAGGTACCTTGTCATCCGGGGTTACGGCAGGATTAGGCAAGATGACGAAGACAGCGAGGAAGAAGTATCGGATGATGACATTGATGAGACTTTAGCGGCAGCGTTCGCTAGTTCCAATACGAACATCAACACAAGTTACAGTTCCTGA

Transcript

Paelopatides58167

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02825	WWE	WWE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004170	Domain	WWE domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR018123	Domain	WWE domain, subgroup	Interproscan
IPR037197	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR045322	Family	E3 ubiquitin-protein ligase HECTD1/TRIP12-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45670	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-