Gene detail

Detailed information of Paelopatides57065 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides57065	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	utg67992	106308	161376	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides57065

ATGTTTTTTCCAAGAGCAATTTCCAAAAGGGTTCCTGCAACAAAGAGGATTCTACCCAAGAAGAGGACAGATGTGACCAATAGTGGATCTCATAGCAAAGCTGTAATTTCTCTTGATGCTAAAATGAAGGAAGAGAATGCTTGTAGAAGTAATTTGAAGACTGACGAAGATGAAGAGAGAAATAAGGAATCCAAGCACTGTCCAAATGATGTAGACACAGGTGGAGGAAAAGCCACAAATTTCAGTCAAAATTTATCAAATGATCAATTTGAAAAAGAGACAAAAAGTTCAGGGGTAGCTAAAATGAGTTCATCTCATAGCAAACCATTTGAGACTAGTTATAAGAAAGATAGTAGTAATATTTTGGTAGATTCAGAATCACAGTTTGTCAAGGATCAGCAGCAAGTGGGAGGACATTCAGCTGTTCCAGTGCCACCTCATCCATCAAGGACTTCTTTTGAAGGAGAAAAGTATGAGAGTGCTGCACAGGATGCAGAGCCGATTGTGTCTTACAGTAAGAATCAAAGGTGGCCTGAGGAAAGTGAACTTGTATGTGTCATCTGTGGTCGGTATGGAGAGTACATCTGTGACAAGACGGAGGCTGATATTTGTAGTATGGAATGCAAAGCCAAAAATTTGACGAGAAAGATAAAGGTCGACGATGTTCAAGTTGAGCTGTCAGAACAGACTGGAAAGGATGACGAAATTGACGAAGTGATAACAGATGAGTTTGTGCTATCATATTCATACACAGAATGTTTAGAAATATCTCGTCTAACCAGAGAACACGTTCAGGATGTCCGAGCAGAGTTTGACATTTTTGTTGAGGGTTTAGACGTCCCCAGGCCAGTACTCTCATTTGAGCAGCTCTTTCTGCCCTCAAAATTTCTTCAAAATTTAAAAGTTGCCAACTACCTAACCCCAACACCAGTTCAAATGCAAGTTATACCAGCAGCACTAAAAGGAAGAGATTTGATGGTTTGTGCTCAGACCAGTTCTGGGAAGACTGCTTCTTTCGTCATCCCAAGTATCCTCCACGTAATTAAATTCCAAGAGTCTCTCGTGAACAGACCACTGGTATTAATCGTGACGCCAACCAGAGAACTAGCAAACCAAATTGAAGATCAAACGAAGTCTTTCATGAAGGGCATTCCAAACATGAGAACAGCTCTATTAATTGGTGGAATGCCATTGCAGCCTCAGTTACACAGACTTAAACAGAGGATACAGGTTGTCATAGCAACTCCAGGGAGGCTGTTACAGATATTGGGTCAAAGTGGTTTGTCTCTATCGTCAATTAAATTACTGGTGATAGATGAAGTGGACTCGATGTTACAGGATGGCTTCAATGAACAGTTTGTAAGAGTGTATATGACAGCTAGTTCAGGTGTGTGTGTATGGTTAGCATCATTCAAAGCCAATTACCAGACACCTACCAGACATTGCTGTTCTCTGCTACAATACCCTCAGCCACGAGAAAATTGCAGAGGAGATGCTGTCAGACCCAATATTTGTGTCAATTGGCACTCGGCGCCCGCGCGGCAGAGAGGTTGTCTCCAAGCCTTGTCGGTCAGCAAGGGTCCCTTTAGGTTCGAGCCTCACGGGGTCAGGTTGATTCCTGTTCCGGAGTTCCTTCCTAGGATTCAAACCCTAGAGTTGTCCCGGGGGATCTTTCCTACCAGACATCAGGAGCCTTCATCGGTGGCCGAGGACAAGCTCTGTTCTCCTGTCAGGGCACTGAAGTGGTACCTTCTTAGGGTCAAACACCTTCGGCCCTCCGATCGGTTGTTCGCCCTTCCCAGAAGCCACTACAAGGCGGCTTCTAAGGATACCTTTTCTCGCTGGCTGTCGGAGGTCATCTCACCGCACTCCGCGGACTCTAGAGTAGGGGCTCACGAGGTCCGAGGTCAAGCGGCGTCTAGGGCTCTCTTCGCAGGCGTGCCTATTCAGGATTTCCTGAAAGAAGCGGCCTGGAAGACCCCTGCTACCTTCGTCGCCTGCTGCCTTACGGACACGCTGGCGGCCGAAGCAGATCTCGGCCGAGCGACCCTGGCACGCTCTTCCCATGGAGGAAACCGCCCACCGGTTTTAACGGTGCTACTCTGCATATTTTCATTGTTGAACAGTATACTAGACACATTTATAATGGGTAGAAGTATCGTCTGGAATTATTTTGAAAAATCAGACGATGGTGTAACTACTTGCAAACTTTGCAAGAAAAAAGTTAAAGCGTCTTCTAGTAGTACCTCTAACTTGCGTCACCACTTGCGTGTCCATCATCCGCGAGAACATGTTACACTAAATGCATCAACTTCAGCAGGTGCTAGTACTTCAGGGGAATCATCTGTTGGGCAGTCAAGTCCAGGAAAAAAAACCCAGAGTCAAATAGCACAGTTATTTGCTAAAAACACACCATATGCACGTGGAGATAAGCGGCACGAAGAAATAACTCATGCAGTGACTTTTTGCATTGCAAAAGACTTAATGCCTCTAAGGACTGTTGAAAAACCCGGTTTTCGACTTCTCGTAAAAAAACTGGACCCACGGTATGAGCTACCTAGTGAACGGACAATGTCAAGGACGCTCATCCCAAAGTTATACGAGGTTACGCGTGAAAAAGTATTGGTGCGTCTCAGGGAAGTTTCATATTTTTCGGCCACAACTGACATGTGGTCATCCCATGGCATGACCCCATATATGGGGTTTTCGGTCCATTTTATTGACAGTAGTTGGGAACTGCAGCATATCGATTTAGGCACCCGATTTGTCCCTGAAGACCATACTGCAGAGACAATTGTGGAAGCAATGAACGATGTACTTGATCAATGGGGACTGAGGTCATCCAAGCTTGTTTGCATAACCACGGACAATGGGTCAAATATAGTTAAGGCTGTCAGAGACTTGGGGTGGTGCCATTTGCCGTGCTTTGGGCACAACCTACATCTTGGCATTACCAAGTCTTACTCAGCTACCAATGACGCAGATGTCCATCGTAGAGTTAGCCATTCGCTTGGAGTTGCCCGCTGTCTAGTAGCAAAGTTTCACACAAGTTGGAAGAAGAAACGGGATTTGCAGGCCGCTCAAGTAAACAATGGAAAGAAAGCACAGTGTCTCATTTCGGACTGTGTGACAAGATGGGGCTCTTTACAGGCCATGTTAAAACGCATTATTGATAACGAGGATGAAATCAAACAAGTCATCGTTAATGACAGGAAGACTGCACATTTAGTACCACGGTGGCAGGATATTACTGTTTTCGAATCTTTGAACAATGTAATGGAGCCCCTTGCTGAGCTTACTGACATAATGTCAGGCAGCAAGTATGTAACTGTGTCATGCATCAAGGCGATGCTTGCCCGCTTAGAGGGTGATGTTTTGGCTCCCGAGACCCCAGAGGATGAGCCAAATCCCGATGGTCTCCTGACAAACAAGCTCCGCCGCAACATCTTAGCTGACCTTCTCCCACGTTACCAGTCAGAAAGTAGGCAGAATGTCCTCAATGTAACATCGTTTTTGGACCCCCGTTTTAAGGCGTCACACCTTACAGAGGACAATTTAACGTCCGTGAAAGCCACGCTTTTGGAGGAAACTATCGGCGGGGTTCAAATACAACCCATCCCGAGAACAGCTGCTATCCAACCTACAAACCCATTAGATGATGATACTCCTCTTCAAACCCCTCCCACGAAAAAGCAAAGAACCCTAGGTTCTTGGCTCGGAAGGACCAAGGCCCAGCAACCCCCCTCAGATATCAGATCACATCACGAGAAAATGAATCAAGAAATGGATCTGTACACAGCCATGCCCTCTGTAGATTGTGATGAAGATCCACTAATATGGTGGAGGGACCACGAAAAAGATTTTAAGCACATGGCACAACTTGCCAGAAAATTTCTTTCAATTCAGGCAACTTCTTCCCCATCCGAACGCCTTTTTAGCAAAGCTGGTGCAATCATAACCCCCAAAAGAGCACAGCTGAATCCCGACAAAGCCAATATGCTTGTGTTTCTTGCCCAAAATTTATAA

Transcript

Paelopatides57065

GCGGCGCCCATACACCAATCTCTTCCGTTCGTATCCTATTCCAAAATAAAAAGATAAAAGGATCAGGGCTGAGTGAGTGGTCATTTTGCCCTACATTTGGTCAGTTTACCTCACAGTTGGCAAAATGTTTTTTCCAAGAGCAATTTCCAAAAGGGTTCCTGCAACAAAGAGGATTCTACCCAAGAAGAGGACAGATGTGACCAATAGTGGATCTCATAGCAAAGCTGTAATTTCTCTTGATGCTAAAATGAAGGAAGAGAATGCTTGTAGAAGTAATTTGAAGACTGACGAAGATGAAGAGAGAAATAAGGAATCCAAGCACTGTCCAAATGATGTAGACACAGGTGGAGGAAAAGCCACAAATTTCAGTCAAAATTTATCAAATGATCAATTTGAAAAAGAGACAAAAAGTTCAGGGGTAGCTAAAATGAGTTCATCTCATAGCAAACCATTTGAGACTAGTTATAAGAAAGATAGTAGTAATATTTTGGTAGATTCAGAATCACAGTTTGTCAAGGATCAGCAGCAAGTGGGAGGACATTCAGCTGTTCCAGTGCCACCTCATCCATCAAGGACTTCTTTTGAAGGAGAAAAGTATGAGAGTGCTGCACAGGATGCAGAGCCGATTGTGTCTTACAGTAAGAATCAAAGGTGGCCTGAGGAAAGTGAACTTGTATGTGTCATCTGTGGTCGGTATGGAGAGTACATCTGTGACAAGACGGAGGCTGATATTTGTAGTATGGAATGCAAAGCCAAAAATTTGACGAGAAAGATAAAGGTCGACGATGTTCAAGTTGAGCTGTCAGAACAGACTGGAAAGGATGACGAAATTGACGAAGTGATAACAGATGAGTTTGTGCTATCATATTCATACACAGAATGTTTAGAAATATCTCGTCTAACCAGAGAACACGTTCAGGATGTCCGAGCAGAGTTTGACATTTTTGTTGAGGGTTTAGACGTCCCCAGGCCAGTACTCTCATTTGAGCAGCTCTTTCTGCCCTCAAAATTTCTTCAAAATTTAAAAGTTGCCAACTACCTAACCCCAACACCAGTTCAAATGCAAGTTATACCAGCAGCACTAAAAGGAAGAGATTTGATGGTTTGTGCTCAGACCAGTTCTGGGAAGACTGCTTCTTTCGTCATCCCAAGTATCCTCCACGTAATTAAATTCCAAGAGTCTCTCGTGAACAGACCACTGGTATTAATCGTGACGCCAACCAGAGAACTAGCAAACCAAATTGAAGATCAAACGAAGTCTTTCATGAAGGGCATTCCAAACATGAGAACAGCTCTATTAATTGGTGGAATGCCATTGCAGCCTCAGTTACACAGACTTAAACAGAGGATACAGGTTGTCATAGCAACTCCAGGGAGGCTGTTACAGATATTGGGTCAAAGTGGTTTGTCTCTATCGTCAATTAAATTACTGGTGATAGATGAAGTGGACTCGATGTTACAGGATGGCTTCAATGAACAGTTTGTAAGAGTGTATATGACAGCTAGTTCAGGTGTGTGTGTATGGTTAGCATCATTCAAAGCCAATTACCAGACACCTACCAGACATTGCTGTTCTCTGCTACAATACCCTCAGCCACGAGAAAATTGCAGAGGAGATGCTGTCAGACCCAATATTTGTGTCAATTGGCACTCGGCGCCCGCGCGGCAGAGAGGTTGTCTCCAAGCCTTGTCGGTCAGCAAGGGTCCCTTTAGGTTCGAGCCTCACGGGGTCAGGTTGATTCCTGTTCCGGAGTTCCTTCCTAGGATTCAAACCCTAGAGTTGTCCCGGGGGATCTTTCCTACCAGACATCAGGAGCCTTCATCGGTGGCCGAGGACAAGCTCTGTTCTCCTGTCAGGGCACTGAAGTGGTACCTTCTTAGGGTCAAACACCTTCGGCCCTCCGATCGGTTGTTCGCCCTTCCCAGAAGCCACTACAAGGCGGCTTCTAAGGATACCTTTTCTCGCTGGCTGTCGGAGGTCATCTCACCGCACTCCGCGGACTCTAGAGTAGGGGCTCACGAGGTCCGAGGTCAAGCGGCGTCTAGGGCTCTCTTCGCAGGCGTGCCTATTCAGGATTTCCTGAAAGAAGCGGCCTGGAAGACCCCTGCTACCTTCGTCGCCTGCTGCCTTACGGACACGCTGGCGGCCGAAGCAGATCTCGGCCGAGCGACCCTGGCACGCTCTTCCCATGGAGGAAACCGCCCACCGGTTTTAACGGTGCTACTCTGCATATTTTCATTGTTGAACAGTATACTAGACACATTTATAATGGGTAGAAGTATCGTCTGGAATTATTTTGAAAAATCAGACGATGGTGTAACTACTTGCAAACTTTGCAAGAAAAAAGTTAAAGCGTCTTCTAGTAGTACCTCTAACTTGCGTCACCACTTGCGTGTCCATCATCCGCGAGAACATGTTACACTAAATGCATCAACTTCAGCAGGTGCTAGTACTTCAGGGGAATCATCTGTTGGGCAGTCAAGTCCAGGAAAAAAAACCCAGAGTCAAATAGCACAGTTATTTGCTAAAAACACACCATATGCACGTGGAGATAAGCGGCACGAAGAAATAACTCATGCAGTGACTTTTTGCATTGCAAAAGACTTAATGCCTCTAAGGACTGTTGAAAAACCCGGTTTTCGACTTCTCGTAAAAAAACTGGACCCACGGTATGAGCTACCTAGTGAACGGACAATGTCAAGGACGCTCATCCCAAAGTTATACGAGGTTACGCGTGAAAAAGTATTGGTGCGTCTCAGGGAAGTTTCATATTTTTCGGCCACAACTGACATGTGGTCATCCCATGGCATGACCCCATATATGGGGTTTTCGGTCCATTTTATTGACAGTAGTTGGGAACTGCAGCATATCGATTTAGGCACCCGATTTGTCCCTGAAGACCATACTGCAGAGACAATTGTGGAAGCAATGAACGATGTACTTGATCAATGGGGACTGAGGTCATCCAAGCTTGTTTGCATAACCACGGACAATGGGTCAAATATAGTTAAGGCTGTCAGAGACTTGGGGTGGTGCCATTTGCCGTGCTTTGGGCACAACCTACATCTTGGCATTACCAAGTCTTACTCAGCTACCAATGACGCAGATGTCCATCGTAGAGTTAGCCATTCGCTTGGAGTTGCCCGCTGTCTAGTAGCAAAGTTTCACACAAGTTGGAAGAAGAAACGGGATTTGCAGGCCGCTCAAGTAAACAATGGAAAGAAAGCACAGTGTCTCATTTCGGACTGTGTGACAAGATGGGGCTCTTTACAGGCCATGTTAAAACGCATTATTGATAACGAGGATGAAATCAAACAAGTCATCGTTAATGACAGGAAGACTGCACATTTAGTACCACGGTGGCAGGATATTACTGTTTTCGAATCTTTGAACAATGTAATGGAGCCCCTTGCTGAGCTTACTGACATAATGTCAGGCAGCAAGTATGTAACTGTGTCATGCATCAAGGCGATGCTTGCCCGCTTAGAGGGTGATGTTTTGGCTCCCGAGACCCCAGAGGATGAGCCAAATCCCGATGGTCTCCTGACAAACAAGCTCCGCCGCAACATCTTAGCTGACCTTCTCCCACGTTACCAGTCAGAAAGTAGGCAGAATGTCCTCAATGTAACATCGTTTTTGGACCCCCGTTTTAAGGCGTCACACCTTACAGAGGACAATTTAACGTCCGTGAAAGCCACGCTTTTGGAGGAAACTATCGGCGGGGTTCAAATACAACCCATCCCGAGAACAGCTGCTATCCAACCTACAAACCCATTAGATGATGATACTCCTCTTCAAACCCCTCCCACGAAAAAGCAAAGAACCCTAGGTTCTTGGCTCGGAAGGACCAAGGCCCAGCAACCCCCCTCAGATATCAGATCACATCACGAGAAAATGAATCAAGAAATGGATCTGTACACAGCCATGCCCTCTGTAGATTGTGATGAAGATCCACTAATATGGTGGAGGGACCACGAAAAAGATTTTAAGCACATGGCACAACTTGCCAGAAAATTTCTTTCAATTCAGGCAACTTCTTCCCCATCCGAACGCCTTTTTAGCAAAGCTGGTGCAATCATAACCCCCAAAAGAGCACAGCTGAATCCCGACAAAGCCAATATGCTTGTGTTTCTTGCCCAAAATTTATAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF02892	zf-BED	BED zinc finger	Domain	Interproscan
PF04438	zf-HIT	HIT zinc finger	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR007529	Domain	Zinc finger, HIT-type	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-