Gene detail

Detailed information of Paelopatides56820 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides56820	RADICAL SAM PROTEINS	utg665	83345	132814	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides56820

ATGCCAGCCCTAGAGCCATTTCTTGATGATATAGAGGACATAATTAGTACTGATGATGTAACACCTCAAGATAGGTACAATAACAAGAAGAAAGTTGTACCAAAAATACACCGCAGGAAAGAAAGAGCATCTGGATCAATAGGAAAGGAAATTATTGTTGCTGACAGCGTGATTCCAGGTACTCAAAGTATCTACGTGAAGACCTGGGGATGTTCTCACAATAACTCGGATGGCGAATATATGGCCGGACAACTTGCTGCATTTGGCTACAAAATAACAGATAACTGGGAAGATGCAGACTTGTGGCTATTGAACAGTTGTACAGTGAAGAGTCCTGCTGAAGATCACTTCAGAAATGAAATCAATAAAGCTCAACAGAAAGGCAAATATCTGGTGCTCTCTGGGTGTGTCCCTCAGGCCCAGCCCAGGGCTGGATATCTCCAGGGGGTCAGCGCTGTGGGTGTTCAGCAGATTGATAGGGTGGTTGAAGTTGTCGAGGAAACTCTCAAAGGTCATACAGTAAGATTATTTGGTCAAAAGAAATCAGAAGGGAGGAAGATTGGAGGTGCTAGGTTGGATTTGCCAAAGATAAGAAAGAATCCTCTTATTGAAATTCTTGCCATCAATACAGGTATACCGGTGTACAAAATGGCATATGGTATCAATTTCGACCTGAAATTTAATTTAAGCGATTTAGATGATAACGAAAATGTTGGAGATGAAAGAGAAAATAGATTTGCAAATCTCGCTGGGAGCGATTTAGATCAAATCAGTGAAGAAAGAAACGAAGAAACAACAAAGAAGGCCACTAAATGGGGAGTAAAACTCCTGAAAGAGTGGTGTTTGGCTAAGCAAATATCGCCTGACTATGAAGAGCTCCCGGTGCCAGAATTAGCGTCTCTCCTGAGACGTTTTTATGGAGAGGTCCGAAAACAGGACGGGCAGACGTATGCCATCAAATCATACAGGGGACTGCGGGCTGCTATTCACCGACATCTAACAGGGGCTCCTTACAATCGCCGTGTTAACATTATGTGTGATAGTGAGTTCCAGAGTGCCAATAACGTCTACATTGGTATGCTAAAACGAATCAAGAGAGGTGGTTTGGACACAAGCAGTCATAAACCCGCCATATCTGATGGTGACCTGAAGAGGATGTTTAATAGCAAAGTGGTATCCATGGATAATCCGTCTAGCTTATTAAACCTTGTTTGGTTCAATTTAGAGTTTTACTTTTGCCGTCGAGGTCGCGAAGGCCTCCGTAGTCTGAAAAAGGACTATTTCAGTTTCGGGATCGACGATATGGACAAAGAATACATGTATATGAACATCAATGAATCCACCAAGAATCATCCAGGAGACTTACAACATGATTTTGAATCTAACAAAAGGATGTATTCGACGAACGAGGAAATGTGTCCAGTGAAAGCCATCAAAAAATATCTCAGCAAGCTTAATCCCAACTGCCCATTCTTTTTTCAAAGACCAAAGTCAGGAGCAACTGAATCAGATAAAGTATGGTACGACAATAAGCCTCTAGGTGTAAACACCCTTGGTCGAATGATGACCAACATTTCCGAGAAAGCAAACCTCAGCCTGAAATATACTAACCATAGCGTACGGGCAACAACGATAACATCTTTGAGCAATGCTGGCATCGAAACCAGAGTTATCATGGCGTTAAGCGGTCACCGAAATGAAAATAGCATCAGAAGTTATTGCCAGGAGGCTTCCAATGAACAAAAGAGGCAATGCTCAGGTGTCCTGGGAGCAGCGATCAAAGGAAACGAACCAAGTTCTAGACCGCCATTGACTCCCCAATGTCAAAACTCCATCGTTAACACTAACGTAACGACATCGAGAACCGCTACATCAACTACATCAACAGTGATCGCGAATACAGCAGCAAATGTATTCAAGAAATGCATGTTTCAAGGGACAGTAAATGTCATTCTCCAACAAAAATGCTTGAACCAATGTACTTACTGTAAAACCAAACATGCAAGAGGTGAACTAGGCAGCTACCCTATTGAAGATTTAGTAGAGAGAACCAAGCAATCATTCCAAGAGGGTGTTTGTGAAATGTGGCTAACCAGTGAAGATACAGGTGCCTACGGTATAGACATCGGCGTCACCATTGTTGACCTTCTCTGGAAACTAGTGGAGGTCATACCAGATGGATGCATGATGAGAATTGGTATGACTAACCCACCTTACATACTCCAACATCTAGAGGAAATTGCTAAAATTTTGAATCATCCTAGGGTGTATGGTTTTCTGCATGTACCGGTGCAGTCTGCATCTGACAGTGTCCTAATGGATATGAAGAGAGAATATTGCCTGGCTGACTTTAAGAGAGTCATGGATGTACTGAAGGAAAGAGTGTCTGGTGTTACCATAGCAACTGATGTAATATGTGGATTTCCAACCGAGACAGAGGAAGATTTTGAAGAAACTATGGAACTTGTCAGACAGTACAGATTTCCAAGTTTATTTATCAATCAGTTTTTCCCAAGGCCAGGTACACCTGCTGCTAAGATGCCACAATTAGATGCTCAGGAGAAAAAGAAGCGTACCAAGCAGATATCAGTTTTATTCAAAAGTTACCATCCATATGGTCACAAACTCGGAGAAACACAGAATGTTCTGGTGACAGAGGTCTCACATGACAAACAATTTTGGGTCGGTCACAACAAATTTTATGAGCAGATCGTTAGAGAAAAGGAAATAAACACCATCCATAGCTACTCCCTCGCACAAGGAGAAATATCTGGACTGCCAAAGAAGGTTGTTGCTGAGAGTCATCAACATAATTTCTGGTTTTATTTATCTGTGGTATTAGTCGGAGCAGCTGTAATATACGAACTGATTAGAATTGCTACCAAGTTGGTACAAAGGTGA

Transcript

Paelopatides56820

ATGCCAGCCCTAGAGCCATTTCTTGATGATATAGAGGACATAATTAGTACTGATGATGTAACACCTCAAGATAGGTACAATAACAAGAAGAAAGTTGTACCAAAAATACACCGCAGGAAAGAAAGAGCATCTGGATCAATAGGAAAGGAAATTATTGTTGCTGACAGCGTGATTCCAGGTACTCAAAGTATCTACGTGAAGACCTGGGGATGTTCTCACAATAACTCGGATGGCGAATATATGGCCGGACAACTTGCTGCATTTGGCTACAAAATAACAGATAACTGGGAAGATGCAGACTTGTGGCTATTGAACAGTTGTACAGTGAAGAGTCCTGCTGAAGATCACTTCAGAAATGAAATCAATAAAGCTCAACAGAAAGGCAAATATCTGGTGCTCTCTGGGTGTGTCCCTCAGGCCCAGCCCAGGGCTGGATATCTCCAGGGGGTCAGCGCTGTGGGTGTTCAGCAGATTGATAGGGTGGTTGAAGTTGTCGAGGAAACTCTCAAAGGTCATACAGTAAGATTATTTGGTCAAAAGAAATCAGAAGGGAGGAAGATTGGAGGTGCTAGGTTGGATTTGCCAAAGATAAGAAAGAATCCTCTTATTGAAATTCTTGCCATCAATACAGGTATACCGGTGTACAAAATGGCATATGGTATCAATTTCGACCTGAAATTTAATTTAAGCGATTTAGATGATAACGAAAATGTTGGAGATGAAAGAGAAAATAGATTTGCAAATCTCGCTGGGAGCGATTTAGATCAAATCAGTGAAGAAAGAAACGAAGAAACAACAAAGAAGGCCACTAAATGGGGAGTAAAACTCCTGAAAGAGTGGTGTTTGGCTAAGCAAATATCGCCTGACTATGAAGAGCTCCCGGTGCCAGAATTAGCGTCTCTCCTGAGACGTTTTTATGGAGAGGTCCGAAAACAGGACGGGCAGACGTATGCCATCAAATCATACAGGGGACTGCGGGCTGCTATTCACCGACATCTAACAGGGGCTCCTTACAATCGCCGTGTTAACATTATGTGTGATAGTGAGTTCCAGAGTGCCAATAACGTCTACATTGGTATGCTAAAACGAATCAAGAGAGGTGGTTTGGACACAAGCAGTCATAAACCCGCCATATCTGATGGTGACCTGAAGAGGATGTTTAATAGCAAAGTGGTATCCATGGATAATCCGTCTAGCTTATTAAACCTTGTTTGGTTCAATTTAGAGTTTTACTTTTGCCGTCGAGGTCGCGAAGGCCTCCGTAGTCTGAAAAAGGACTATTTCAGTTTCGGGATCGACGATATGGACAAAGAATACATGTATATGAACATCAATGAATCCACCAAGAATCATCCAGGAGACTTACAACATGATTTTGAATCTAACAAAAGGATGTATTCGACGAACGAGGAAATGTGTCCAGTGAAAGCCATCAAAAAATATCTCAGCAAGCTTAATCCCAACTGCCCATTCTTTTTTCAAAGACCAAAGTCAGGAGCAACTGAATCAGATAAAGTATGATGCTTGAACCAATGTACTTACTGTAAAACCAAACATGCAAGAGGTGAACTAGGCAGCTACCCTATTGAAGATTTAGTAGAGAGAACCAAGCAATCATTCCAAGAGGGTGTTTGTGAAATGTGGCTAACCAGTGAAGATACAGGTGCCTACGGTATAGACATCGGCGTCACCATTGTTGACCTTCTCTGGAAACTAGTGGAGGTCATACCAGATGGATGCATGATGAGAATTGGTATGACTAACCCACCTTACATACTCCAACATCTAGAGGAAATTGCTAAAATTTTGAATCATCCTAGGGTGTATGGTTTTCTGCATGTACCGGTGCAGTCTGCATCTGACAGTGTCCTAATGGATATGAAGAGAGAATATTGCCTGGCTGACTTTAAGAGAGTCATGGATGTACTGAAGGAAAGAGTGTCTGGTGTTACCATAGCAACTGATGTAATATGTGGATTTCCAACCGAGACAGAGGAAGATTTTGAAGAAACTATGGAACTTGTCAGACAGTACAGATTTCCAAGTTTATTTATCAATCAGTTTTTCCCAAGGCCAGGTACACCTGCTGCTAAGATGCCACAATTAGATGCTCAGGAGAAAAAGAAGCGTACCAAGCAGATATCAGTTTTATTCAAAAGTTACCATCCATATGGTCACAAACTCGGAGAAACACAGAATGTTCTGGTGACAGAGGTCTCACATGACAAACAATTTTGGGTCGGTCACAACAAATTTTATGAGCAGATCGTTAGAGAAAAGGAAATAAACACCATCCATAGCTACTCCCTCGCACAAGGAGAAATATCTGGACTGCCAAAGAAGGTTGTTGCTGAGAGTCATCAACATAATTTCTGGTTTTATTTATCTGTGGTATTAGTCGGAGCAGCTGTAATATACGAACTGATTAGAATTGCTACCAAGTTGGTACAAAGGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00919	UPF0004	Uncharacterized protein family UPF0004	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF12012	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR006466	Family	MiaB-like tRNA modifying enzyme, archaea/eukaryota	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR013848	Domain	Methylthiotransferase, N-terminal	Interproscan
IPR021893	Domain	Domain of unknown function DUF3504	Interproscan
IPR023404	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR038135	Homologous_superfamily	Methylthiotransferase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11918	RADICAL SAM PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0035596	Molecular Function	methylthiotransferase activity	Interproscan
GO:0035598	Molecular Function	N6-threonylcarbomyladenosine methylthiotransferase activity	Interproscan
GO:0035600	Biological Process	tRNA methylthiolation	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-