Gene detail

Detailed information of Paelopatides53613 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides53613	PROTEIN CBG26694	utg5116	214715	218468	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides53613

ATGGCGTTGATAGGTAAAATTGACAAAATTATCGAAGGGAAGGAGGACTTTGATAATTATATGGAAAGATTGGAGCACTGGCTTGATGCTAACAGCGTAGAAGACGTCAAAAAGTGCAGTGTTTTCCTGTCGGTAATTGGTGCTACAAGCTACAGTGTACTGAAACACTTGTTATTACCAGACAAACTCACGGAACATACATACACAGCGTTGAAGGAAAAGCTACGAACACATTACAAGCCGAAACCTGTTGTGATAGCTGAGAGATTTCGCTTTCACAAACGAAACCAAAAGCCAACCGAAAGTATCCAGGAATACTTAGTAGCTTTAAAGGAGCTTACCAAACAATGTGAGTTTGGGGAATTTTTGAATGAGGCGTTAAGGGATCGTTTCGTTTGCGGGCTAGTCGATGAACATATTCAGCAGAAACTACTGAGTATGAAGGACTTGACCTTTACAAAAGCTACTCAAATTGCAATAGCTATGGACCTAGCACATTCAAACGCACAAGAATTGAGTGTAAAACATGTGAACAAAGTCGATGACAGTCGTTCATTTAAGGGACAAAATAATCGCTACAGGCAGTCTAAGCCAAATTCAACGAAGGCGGGAGGAACAACAGGTACTTTTGGTAGAAAACCACAAAACAAGGGAAACCCTTGCTACAGATGTGGATCAGGAGGTCATGACTCAGGGTCATGCTATTTCAGGAATGAGGAATGCCATAGGTGCCACAAAGTGGGGCATATTGCCAAAATGTGCAAATCGAGTGCCACCAATAGCTATCCAGATCATACACGTAACAGGGCAGCTAGAAATAATTATAGGCCAAACGAACAACCCAGAGAGCAATACGGTAAGCATGGGGGTGCAAACCCTACAAGGCTTGTGGATGGTGACCAAGATCAAGACGTCACAGATACAAATGGCTTGTTTACCATCTATTCAACAAACAGAGTTAAAGGGACAAATGAGATCAAACTTGATGTGGATGTGTCAGGACAGAAAATACCATTTTTATTGGACACTGGTGCATCACTGTCAATAATTTCAGAGGTTATGTACCGCAAGAAACTCGCCCATGTTCCATTAAAGGACACACTATTCCGTTTGACTACATACACCGGGGAGACGATTCCACTGGCGGGTGAGATGGAAGTCGACGTGCAGTATGCAAACCAGAGAGAAACACTACCCCTAATTGTTGTGAAAGGAGATAATCCACCACTTTTTGGGAGGAACTGGTTGCAACGGATCAAACTAGACTGGAGTGAGATATTTTCAGTCATGGCTGCGACTGAAACTGAAGTATCTGAAGTAATCAGCAAGCACTCTGAAGTTTTCAGTACAGATAAACCAGGCAACATCCAGGGATACCAAGCAAATATTCAGCTTAAGGATGGCGCCAAACCAAAATTCTGTAAGGCACGAACAGTACCTTTTTCATTGCGAAAGGCAGTTGATGAACAGTTGGACATGTTGGAAAAAGATGGTATCATTAAAAAGGTAGAACATAGTGAGTATGCTTCACCCATAGTGATTGTGCCAAAGGCAGATGGGGGAGTAAGAATTTGTGGAGATTACAAGGCTGAGCACATTGCAAACTTAGATGAAGTATTAACTAGACTGCAAACGAGGGGATTCAAGGTCAAACGTGAGAAGTGTGTGTTCTTCCAAACTAGTGTTGAATATTTGGGGCACATAATAGACTCTGAAGGGGTTCATCCTACTAAAGACAAAGTGGATGCAATTATGGGAGCACCTGCACCTGAAAATGTAAATGAGTTACGGGCATTTCTTGGGTTATTAAACTACTATGGGAAGTTTATAAGGAACCTATCGACCATATTAGGGCCACTAAATGAGTTACTGCGAAAAGACAAACCCTGGAATTGGAATGAAGGCTGTCAGACAGCTTTCCAGGAATGTAAACGTCAGCTGTCTTCCTCAAGGGTACTTGTGCATTATGACACAAATTTACCACTTCGCTTAGCTTGTGATGCGTCACCATACGGTGTCGGAGCAGTAATTTCGCATGTGTTAGAGAATGGTGAAGAACACCCAATAGCATATGCTTCTCGCACTCTCTCAAGTAGCGAGAAAAACTACGCTCAGATTGAGAAGGAGGCTCTCTCAATTGTGTATGGTATCAAAAAGTTTCATAAGTATTTATATGGAAGGAAATTCACGCTGTACACTGATCATAAACCATTGGTGGCAATATTTGGTCCAAAACGGGGAGTGCCAACTTTAGCGGCACTACGAATGCAAAGGTGGTCATTAATATTGCTTGCCTATGAATACGATATTGTGTACAGGAAGTCAGCAGATCATTGCAATGCTGATGGAATGTCCAGGCTTCCGTGGCAATCATCCAAGGTAGCCATGGAAACTGGAATTTATCAAGTGTCTATCACTGCAAACCTGCCAATGACAGCTAAGGAAATAGCTAATTATACTCATAAAGACCCATTGCTTACAAGGGTATACGATTATATCTTAAATGGTTGGCCTAGTGTATGTTCGGATGAAAACCTAAAACCTAACTTTTCAAGACAAACAGAATTGTCAGTAGAGGGTAAATGTATATTGTGGGGGATGCGTGTAATCATACCACCACCACTAAGAGTGGAATTGTTAGGAGAGTTGCATCAAGGGCACCCAGGAATAATCAGGATGAAGGCCCTGGCAAGGAGTGTATTATGGTGGCCCAATTTGGACAGAGATATTGAAATGAAGGTTAAACAATGTGGTGCATGCTTGGCTGTATCAAATAGCCCTATCACGGCACCATTGCATAACTGGCCATGGCCATCAAGAATATTCCAAAGAGTACATGTAGATTTTGCGGAGAAGGACGGGAAACATTATTTTGTATTGGTAGATAGCCATTCAAAATGGTTAGAGGTTGAAGAAATGGGATCTACAACCTCCAGTAAAACTATTGAAGTTCTGAGAGGCATATTTGCAGCATATGGGTTGCCTGAGGAATTGGTATCAGACAATGGCCCTCAATTCACGTCACAGGAATTCTCAGACTTCATGACCAAAAATGGGGTAAAGCACACACGCGTGGCACCTTACCACCCAGCTTCAAATGGGGCTGCCGAACGTGCTGTGCAAGTTCTTAAGAGAGCTTTGGAAAAACAGGTAGTAGAGGGATCGGGCAAATTGCCTATCCGAGAACGGTTGGCTAAGTTGTTGTTCACATATAGGAATACACCACATACAGTAACTGGCGTAACACCAGCTGAACAATTCCTTAAGCGTCAGCCTAGGACAAAACTAAGGCTAATCAAACCTAGTCTTGCTGAGATAGTTGAGCAAAAACAACTACAGCAAAAACAAGCCCATGACTCTAGTCGCAGTAAGATTAGACAATTCCAGAAAAACAGGAAGTTAGAGTCAGGAACCATCGTGGGGGTGTTGAGAAATGGATTCGTGGGATGGTGA

Transcript

Paelopatides53613

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00077	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF03732	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR005162	Domain	Retrotransposon gag domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR018061	Domain	Retropepsins	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-