Gene detail

Detailed information of Paelopatides48258 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides48258	EPM2A-INTERACTING PROTEIN 1	utg3265	14598	58641	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides48258

ATGCTAGACCTACCACCTCTGGGACCAGATTTCTTCGCAGGACGGTTTCAGGAACAACTCTCAGAAGAAGTTTCCCGACGAGAAACCCTGACTAGGTCTGTCTTCAAAGCTCCCGTGGCACCAAAGGGTCCTCGAGGCGCAGCTACACGCACCACCGGTAGCTCGCGTTCAAAGACGTCCTATCGCCCCAAGACTAACCAGCGAGGCAAGCAGTCCACTTCTCGGGGCAAGGGTTCCAGAGGAACCTACAAAGGCTATTCGACGGGACGCGGTAGTCGTGAAGAGTCAGTATGGTATGTGTCTTTCAATTTGTTAAAGGTGTTAGACTCTGTCATAGGGAGATCAAAAATGGCATCAACAGCCATAATAGCTGATAAACAGACGATAGAATGCAAGGACAATAAAACTGTTTCTGTCCGAGGAAAGAGAAAACAATTAAAAGATGGGAGGAACCATCCAAAGAAGATGTTCAAATCCAGCTATGAAGAACGGTTTGGTGAAACTGACTACTATCTTGATTCAGGTTTCCGGAGGGTTGTACCGTATGTCTATGCATTTGAAACCCATGCAAAGGGCAGATGGTATGGGAAGAAGTTACTCGATATATTTAAAAAGGAGTTTCGTCTGGAAACACCAGAATTTTATGCCAAAGCTATCCAGACAGGACTAATTAAAGTCAACGGACAAAGGACAACAGCAGATTACATCGTAAAGTGCAATGACTTTCTTCACTCAAAAGTTCACAGGCATGAACCTCCCGTCACCTCAGATCCAATTGAAATAATTGAAAACACAGATGAGTTTGTTGTTGTCAATAAACCTCCTTCAATGCCTGTACATCCATGTGGGAAATACAGACACAACACTGTGGTATTTCTACTGGCAAAGGAACACAAGTTGCTGCATCTTCATACGATTCATAGACTTGATAGGCTCACATCAGGACTACTTATTTTTGCAAAAACCAAAGCTGTTTCTCAGAGGATTGATGCTTATGTCAGAGAGAGAAAGCTCAAGAAGACATACATATGTAAAGTTGTCGGTGAATTTCCAAGTCACAATGTGGAGTGCATTGAGCCTATTTTCATAGTGTCTCACAAGATTGGAGTCTGTAGGGTCAGACCTGATGGGAAGCAATGTAAAACTACATTTCAGAGAATTAGTTATGATGGAGAGACGAGCATTGTCAAATGCTTGCATGATCAACAAAGTACGCTGAGATTCAGCTGTAAGGAAAGTGACAGGGTCACAGAAGCATCATTCAAAGTAGCGTGGAATGTGGCGAGAAGCCGAAGGCCTTTCACTGAAGGGGAGCTGATTAAAACATGTTTGCTGGACGCTAGTGAGTCACTTTTTGCTGATTTTAAAAACAAAGACGCTATCGTCCGACATATATCCAAACTGCAGCTTTCTGATTCAACCCTCTGTCGACGTGTGGAAAACATTTCTGATGATTTGTTTTTGAACCTGATAGAAGATCTCAAGAAATCAAACCATTTCAGCTTGGCCATAGACGAGTCTACTGACGTGTCAGACACAGCGCAGCTTATGATATGGGTGCGTTTTCTTAAGGGCAATAGTTTCAAGGAGGAACTTCTTGCACTTCTGCCATTAACAGGTAAAACAAGAGGAGAAGACGTGTGTTTGACACTCATGGGCTTTTTCCGAGGACCAGGGAGAGAGATTGATTTGGGAAAACTGGTGTCAGTTACCACTGATGGTGCACCATCTATGACTGGATGTGAGAAAGGGCTTGTTGCATTACTGAGAAAAGAGCATGGAGTGCCTAACTTTCTATCCTACCACTGTATTATTCACCAGGAACAGCTCTGCTGCAAGCTGAAGGGTGGTGATGAACTGAAAACAACGATGGGTAAAGTAGTGAAAGTTGTAAACTACATCAGAAGCCATGCTCTTAAGCACCGACAATTCCGCACATTGGTTGAGGAATACGAGACACAATATCAAGACCTGTCATTGCACGCTGAAGTCCGATGGCTGAGCAGAGGCATCGTACTGGATAAGTTTATGGACTTGCTGCCGGTGATTCGAGAGTTCATTACACAGAAGAAGCAGGCTGATCTGTATTATGTCAGTGATGAGAAATTCGCAATAGAAGTGGCTTTTCTGGCAGACATAACCAAGCACTTAAATTCCCTCAATTTGAAGCTTCAAGGAAATGACAAAGTGCTGCCTGTGTTAGTGAATGATGTTTCAGCCTTCAGACAGAAGCTTTCTCGTTATCAAGCTCAGCTTGGTGACTCTGATTTTACGCACTTCCCAAGATTACGCTCACAAGTCAGTCAGTCTCCTTTCGACCAGCAATATGTGTCGCATACCTCGATGCGCTTGCCACTGAGTTTTCAAATCGTTTCACTGACCTAA

Transcript

Paelopatides48258

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-