Gene detail

Detailed information of Paelopatides44121 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides44121	E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED	utg23305	132417	156128	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides44121

ATGGACCATTTAGAGAAGGAGCTTCTATGCCCGATTTGTGATGACTTTTTCACAAATCCAGTCTTGCTGCCATGCCAACACAACATCTGTCACGGGTGCATCAGACAAAAGATCTTCGGTAACTCTCCCCTGAAAACTGCATTAGGTGGAAGCACCCAATCAATGGACAGCATGAACAGATCATCCATATCGATTTCACCTACGTCACCATCATTGCCACTAGACTTGTCCAATCAGAGCACGTCACGTGGTACAACATCAAATAGTAAGACACCTCCCACATCGAAGAGCAGTTCGGGTCCCAAGCAGTTGAGAAGATCAAAAACTATTTGCGGTAGACCATCTAGTGCGATCGATTCATCAATTGTGGAGGGTGACGTGGATCGCTGTAGGAGGGACTCATTTGGTGTCACTATTTCTCCAAGGCGACCTGTCTTGAGTAGAAATCAGAGTCAAAAAGTGACGTCATTCTTTTGTCCGTCATGTCAGTCTGCCATAAACCTTGGTGAAAAGGGACTGCGTGGCTTGTACAGGAATTTCGCGTTGGAGGTTATTGTTGACAGGTTTAAACTAGAGGTAAAGAAAGCGATGAGCGTATCTTGCGGAGCCTGCAAAAAGTCTCCTGCATTGGACGCGACTAAGAGTTGCCTTGATTGCAAGTCTAGTTTCTGCAACGAATGTTTCAAAAGGACTCATCCTTGGGGTACCGGTAGGGCGCAACATGAATATATTGGCCCCACACACAACTACAGACCAAAGACCCTTATGTGCACAGAACACCCTGACGAAAAGGTAACGATGTATTGCGAAGGATGCAAGAAACCAATCTGTCATCTCTGCAAGTTCACCGGTAATCACAAACAGCACAAGATATCAGTTATTGAGAGGAAGTACACGATTCAAAGGCAAAAATTGGAGCAAATTTTGGGTACAATTCAAGAACGGCAAAGGGTTTTGCTGACAAGGAAGCAGAAACTTCAAACATTGCTTGAAGATACACAGAATGCTGGGACAAATGCGAAGGATGAACTTACTTCAATAACGGAGAGAATACTGATACTGTTGGATGAACGCAGAACATCTCTCACGCAGACCGTCGACGGAGAAGTCAAAACGGTGACAACTTCCTTGAAGTCCCAGTTGTCTGAAATTGAAGCATCGCTCAGTTTGTGCGGCGTCGCTGACCTCGCCCGTGAAATGCTGAGAGAAACGGACAAGGCTTGCTTCATTCAAGCTGTTAGACCTCTATTCGGAAGATTAACAGAAGTAGCAAAAGGTTTGAAGGAGACCGAAGTCGTGAAATCACCTCTGCTTATTGTTCCGTCATTCAGACTCCTTATAAATGATGCTCTCAGAGACAGTGACAGCATCAAGTACCTCGAAGTACCTTCAGCCCCAAAGATGAATGTTACAGACTGTCGCAGTTATGACGATACCTACGTCAAGTGGACCCAGCCATCAGACATTGGTGGTGCTGTTGATTCGTATACTCTGGAATATCGTAAACATGTGCAAGAGAAAAAACCCCAACCGACTACTTTAAGAATTGGTATTGATGACGTCATACCAGAATATAAGGACTGGCTGCCAATACCAAACATAAATGAAACATATTACGTCATCTCTGGTCTTGACGTGGTTTCGTGTTATCACTTTAGAGTGAGGGCAAAAAATTCAAAAGGGGACGGACCTTACAGTGAGATAATGAGTTTGAAGACTGCCGTGGCTCCAGTTCCTAAACTACAGTGGATGACGTCAAAGGGTAATGCTAAGCATTCATTCGTCACTATTTCAAAAGATGGACAGTCAGCTAAAATCTGTAAAAACTTTCGCGGTTTGGAATTTGATCCATTATCACCGATGGTGGAGCATCCTGTCCACATAGTCAATGAAAAGAAACTAACGTCTGCAAATCATTACTGGGAGATAAAGCTCTCTGATTGGCCCTCAGTCGCCCTCGTGGGAATTGTGAGTGAAGAGTCTGCGCAAAACCTCCGTTCCCGCGACAACGGAAACGAAAATGGAGACCACGACAGCGGACACGACAGTGCAGACGATTCTGATCAAACTGAAAATGGACCAAATTATCTTTCGTCAGTAACATTTGCAAAAGGGATGCTCTGTTGCCATGGTAATAAAAGAGGAGGTAAGGTTAAAAGCAGAAGAATTTCTGCTGTTGGCGTATTCATGAATACAAAGGAAGGAAGAGTCATTTATACAAATGCTTGTGACAAGTCTGTTCTTGTGGAGCGGAAGTGTGGAATAGAGGGCGGTGTTCCAGCCGTCACACTTTGGGGTGAGGGAAGCATTCATGTGAATACGATAAGACAAGATTCATTGTTATTGTCTGATATTACAATAGGTAACAATAACAACCCTTATTGTGATGGAAAGATGTAA

Transcript

Paelopatides44121

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR047065	Domain	E3 ubiquitin-protein ligase Trim36, B-box-type 2 zinc finger	Interproscan
IPR050617	Family	E3 ubiquitin-protein ligases and FN3/SPRY domain-containing proteins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24099	E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-