Gene detail

Detailed information of Paelopatides41464 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides41464	NUCLEAR RNA EXPORT FACTOR	utg19152	20297	56600	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Paelopatides41464

ATGGAAGTGATGAGCAAGAGATACGACCCTACCTCAAAGTTTCTGGACCTCTCTGATCTCTTCAATGATGATGACTTAAAGACTAAATCGATCAAATGTCTGTTAAATCAGTCCGCACCATTGAAAGCGGTACTTGATATAATCGCTGTAAACATTCCAGAGACTGTTTCAGTGAATTTGTCATCTAACAGGCTATACAGCCTCAACAACTTCACAAAATTCCCAACATTGGCACCAAATGTAGTCAGTTTGAACCTGTCAAGCAATTCGCTGAAGCATATCAACGAACTACAGAACGTAAAGGATTTGAAATTACAAGAACTTACCCTAGACAAGAATCCGCTGTGCGACTTATTCCCCGACCAGGCGAAATATCTACGTGCTGTCAGAGGAATCTTTCGTGATGTCGTCAAACTGGATGGTCATGACCTTACACCTGAAATTGGCTTTGATGTTCCAACTACGTCACTTCCGGTCATTGGCCCAAGTTTCTTTCCGAGGGAGGATATCAAGGCCAATATCCTGCAGTTTTTAGAAGCGTATTACAGTGAATTTGATTCTCAAGACAGAGGCAAGCTAATGGATGTTTATCATGATCAGGCTAAGTTTTCACTGTCACTTCCCTATGATGTTGGCAGTAGCTGGTACAAACAACTTGCTCACCACTTTACACAGAGCAGGAACTTCAAGAGGTCACAAGATGAATATCTGAGGAACAAAACTCTTAAGCTGCTCAAGCAGGGGCGACTTGCGGTGGCAGCCTTCCTGAGCGAAATGCCCCGCACACAGCATGATTTAATTTCTTTTCTTGTGGATGTTTCATTAGTGCAGCCCCCTCTGATGCATTTTACAGTTAGTGGTGTCCTACGAGAAGAAGAAAGAAACAAGACTCTGATTGCATTCAATAGAGCATTTATTGTATGTGTAGGGCAGACCGGTTTGGTTATACTAAATGACCATCTGACTTACAGACAACCTACGGAACAACAGAAGAAGGTATCTTTCAGCAACCCAGCCCCAACCCCTACCCATAGCCCTGTTAGTGCAGTCCCAGGGCCATCTCCAGTGGTATCACCAGTAGCTGTAGGTGCCTCGGCAGCCCCTGATGCCACTCTCCAACTGCAGATGGTGGAACAATTTATCAAGGATTCTGGCATGAATGCAGGATTCTCTCAAAGGTGCTTGGAGGAAAACTGTTGGGATTACGCAAAGGCTGGAACCGTGTTTATGACTCTCAAGACTGAAGGGAAAATACCACCAGAAGCATTCATACAACAGCCGTGACAACTTTCTATATCTTGCTTTGCATTTTTGCGACAAAAAGAAAAAAGAAAAAAAGGAAGCCAAGCTGCCACCATTTCTAATTTGTGAAGGATACATTTGCATTGTGTCATTTCTAGATTGGTAATTGTGAAGGATATGTGTAATTCACATAGGTGCCATTTCTAATTGGTGATCATGAAGGGTGGATTCACATTGTGCCATTATTAAATTGCTGATCGTGAAGGATGGATTCACATTGTGCCATTCCTAAATTGGTGATGGTGAAGGATGGATTCAGATTGCCATTTCTAAATGGTGATCATGAAGGGTGGATTCACATATATGCCATTTCTAAAAGGTGATCACATGAAGGGTGGATTCACATAGGTGCCATTTCTAATTGGTGTTCACGAAAGGTGGATTCACATTGTGCCATATCTGATTGGTGATCATTTCTATTTGGTGTTCATGAAGGGTGGATTCACATTAGTGCCATTTCTAAATTGGTGTTCATGAAGAGTGGATTCACATTGTACCATTTCTAAATTGGTGATCTTGAACAAAGGATTCACATTGTGCCATTCCTAAATTGGATCGTGAAGGGTGGATGCACATAGGTGCCATTTCTATTTGGTGTTCATGAAGGGTGGATTCACATAGGTGCAATTTCTAATTGGTGTTCATGAAGGGTGGATTCACATAGGTGCAATATTGAATTGGTGTTCATGAAGGGTGGATTCACATTGTACCATATCTGAATTGGTGATCTTGAACAATGGATTCACATTGCAATCTAAATGGTGATTGTGAAGAATAGATTCACATTTACTGGTGTGCCCTACAATCTACAGAATACAGATGGCCCTCGGTCACTTTGATGAGCAGAAATACCATTGGACATATACCATGGTCCATGACTGAGACCATGGTCCATGACTTGATTCCATAGTCCATGACTTTATTCCATGTGATATTTAGTGTTCTGATTTTTCGGCATGCTGCATACAGGTTTACAAGACAGAATTTGCATGCGTGGGAATGTTGTTAATAATACTGCTGTAGTGATGAATTTGTGTCATGTTTTCAGCAGTCGCTAAAAAGATGTCTCGCAAAGTTGTGTGACCTTGAATTGTCATTGTCAAATGGTCGATCGGTTTAAAGGTGCCAATATGCCAGTCTGGAATTTTGATCGAGTTACACAGCACTCGACACTCAAGTTGGCAAGTCTTTAAATAGCAGCACAGGTTTAAGACAAGTGTATACTCTTTACTTCAAAAGCATTTTCTCACTCAATTTGTTTTGATACATTAGTAGTCTTGTAAAAATAGTGAATATATTATGACCTGGCTACACTCATTTAATTACATAACATCAATAGTGAATATATTATGACCTGGCTACACTCATTTAATTATATAACAATGGAAATGCAATATATAATTCTACTTCAGTCCATATATCATTTTCTCAATAATACCAAATATTGGAAGTGTTTTTAAATTAGTGGGTTTGATACATTTAAAATCATGAGTTGTTGATCTTTTATTTTAGTTCATGTGTATTATCAATTTTAATACTACAGCTCTTGTTAAGTTTATACATGGTGACCTATCAATACAGTGAATGTGCTGTCAGGTGCATTTTTAAATCTATACAAATTAATGTATAGTTGGCTGCTAATTTGTCTCCCTGTGTACAAGTTTTATAAAACCATATCAATGTCTGTTGCGCAAGTAAGTGTCTCTGGTACGATAAGACATCATTTCACTTGTAAGATCCCGTTTAATTTTATATGATGTTTGACGTTTTTGAATTGAACAAAGGTTTGCTGCGGTATAAGAGTTGAAAGATTAAATTAATTTTTAAATCCGACAAAAAAAAAATCACAATTGTTCTGGATTTGTGTGCCTCTTACAGTGAAAGTACCATATAAACAAAAACCAAACTATATCATGAAAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATTTTTTGGCTGAAGATTTGTTTAGACTGTTGCACAGATATTGATGGCATATCAAAATCAAACATAAAGATTAACAGTACCAAGCTATTGTACCTTGCTTGTTTAGTGGTAGACTTGTAGTAGCATTGCTTTGTGTATGTTTACATTGCAGTAGTAACAGAGGAGAAGGTATATATATCAATGACCATTTTAATTATATAGAGGATTAAATTTGTTGGCATTTCGGATGGGCAGACGCCCTATTAGCACTAAATTCTCGAGGGTTTACCTAGGGCAGAATATCCCTTTTTTTTTACATGTAGTGTGTTGGGGGCAGTTGTATAACATCCAAGGACATCAAAAAAAGTTAGCATTCATCAGTTCTGTTAGAAGGAACAGAGATCACTTAGCCAAGTAAGCATGATTACCAGTCTGTATTTAATAAGAAACTATAAACAATTTTAAAAGGGTCTTCTGGCAAACTAGACTTCAATATTTAACTATCATGATATTTATCAGTTTTACATTTTCCCCTCGAGAGATGAATAAACCCCTTTAGTCACCAGACCAGGTCCAAGGTCGTGACCATGATTTGGTACAGTACCGTGGGTTGTACTATATTTGGCAAGTAGTCCCGTGTTTGTAAGTGGTGGTGGACAGTGTAGAAGTAACATGAAAGAGCAATCCTGGACATTATATTCTAGCTCTTTAAAGATATTCCAGAGGAGGCAGACCTGTCATATTCTATTGCTGAGGTTGATATTTTTTAGATCTTTTATCAACAATTGTGATCATTCATTCTCATTTTGTTACCATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan
PF03943	TAP_C	TAP C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002075	Domain	Nuclear transport factor 2 domain	Interproscan
IPR005637	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR018222	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR030217	Family	Nuclear RNA export factor	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0051028	Biological Process	mRNA transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-