Gene detail

Detailed information of Paelopatides36126 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides36126	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	utg12986	624745	687959	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides36126

ATGTCATCACTTGTTTATTTCTTTTTTTTCAATACTCTACAATTTTCCTCACATCTCACACTAGAAATGTCACTCCAATCAGAAGAGAATGCGATACAAGAATCTTGGAAACCATCCTTTCTTTCTGATGATGAGTTCAGTCAGCTAATGCTGGAGGCATTGGATGGATTCATGATAGTGTTTTCACAACAAGGACATATCCTGTACACATCAGACAGTATTATATCACTGTTACGGCATCTTCCAAAAGAGTTAAAGTCATCCACCATATATGAGCTGATCCACGAAGACAATAGGCCGGAAATATTTAAAATTCTCATGGAGGCTGACGCTAAAAAGAACGAACCCGAACTGTTGAGAGATAAACGATATAAATTTGTGTGTAGAATGCGGAGGGGTTCTCTTGAACAGAGTGAAAAAGTGCAATACGAAGCAGTGAGATTCAATGGCAGCTTCTCATTCTTCAAAAAATCAAATGCCAAGTTACTAAAAGGAGGTGATCGGGGAGAGCAGTGCTGTTTTGTTGCAACGGTGCGGTTAGAGAACTCTCTGCTTACGCGAGAGATGACAATGTCCATAGGTAAAGAAAAGGAATTTTCATCCAGACACAGTTTAGATTGGAAATTTCTATTCTTAGACCAGAGGGGCCCTCCTGTTTTAGGATATCTACCATTTGAAGTACTTGGAACTTCCGTCTATGACTACTATCACCATGATGACTTGGAGAGGCTCACACAGCATCATGAAGCATTAATGCAGACTGGGGAAGGGACTTCCTGTTACTATAGGTACTTAACAAAAGGTCAGGAATGGATATGGCTGCAAACGAGGTACTTTATCACATACAACCAGTGGAACTCAAAACCTGAATTTATTGTCTGTACTCATCGTGTTGTTAGCTATTCAGAGGTAAGGAAAGGTTTTAGCAGTGAAATAGCATTCACAGACGAGTCCAGTATAAGCACATACTATTCCAACAAATGGAATACCAACAACGATTGTATGTCGGAGATGTCTCTGTCCCTGAAAAGTTCTCCCTCTAGTGAATCCCAAATAGTTGTATCCACCCAGCATCCTATCATGTCAGATAACATCTACAATTTTATTCCTTGTTTAAATTCTATTCTTTCAGAAATGGATGGCAGTATTAGTAATAACCGTTTATTACATTATGACTGTAACGTGGCATCTGTGGAATCACTGCCAAGGTCTGTGTCAAATTCCAGTGCAGAAAGTCATTCTAGTCAGATGAGGGCATCTGTGCCATTCCTGGTAGATAGTCAAGTAACAAAGAATGTGGATATCCCAGGTCAAATGAAGGTCATACAGGTGAAATTTCAGAAACAGTTAGTAGCCAGACACCAAAGACTGCAAGAAGATATTTTGAAACAGCAACAAGAGCTACATAACGTACAGCAACAGTTACTAAACGCACAGCAGTTGATGTTCCAACAATCCCCGAACCTGGGGATAGCCCTGGATCAGAGATTACAGGAGGCTGAGAGTCAGAGAGCATCAGTCAGTAAAGGAGACAGCTGGAGCACTGGGACGATTGTTAAAGATCAACCAGCTGCAACAGAGGCCAGGAGTATCATATTGCCCATACAACAAAGCCTAAATGTGATCCAATCTCCAGTGTATGATCAGCCGATCATGAGTATGACATCGTCCCAGTTAAATGTTCCCATGCTACAGTCGCAACAGGTACACTACCACTTCTTCCCTTCTCCCATCCCTACTAGTGGGCAGGATACAAATTTACCCAAGGTCAGTGAGCGCCTAGCCTTCCCAGACATCATCAATGCTAATCAAAATCCAGGGAATTCGTCCTTATGTCAAGGAGTTCCCATTCAGTCAACATCATTCATGTCACCCTCTCAGATGAAGATGGACACCATCCAGGACCAAGGAGGTAGCCTGCTCTCAAGAACAATCCCCACCCCCAACAACCAACAACTCTTGCCATCGGGCAATAGCAGTAGTATCTTTGATCAAGACTTGGGGGCCTTCCTTAACCCATTGATGCACGAGTACCCTTTGGAGCTATATGACGATATGAGTATCGACCCATCGGTTTATCTGGGATCATTAGACTAG

Transcript

Paelopatides36126

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989	PAS	PAS fold	Domain	Interproscan
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR001067	Family	Nuclear translocator	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR047230	Family	Circadian locomoter output cycles protein kaput-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513	Cellular Component	CLOCK-BMAL transcription complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-