Gene detail

Detailed information of Paelopatides32630 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides32630	RP42 RELATED	utg10435	187801	254257	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Paelopatides32630

ATGGATGTCTGTCCGTCGTCGAAATTTACTGACTTATTTAGTGAAGATAATGTTTCAACAGTAGCTTTTATGATGATAGCCATTGGAGTGTGTCTGTTCATCGTTGGGTTTAGCGGGTGTTGTGGAGCAAAGAAAGAAAGCCCTTTCTGGTTAAACATGTATTTCATCCTGATGCTGGCGTTGGTTATTACAGAAATAGTCGCGGGTATTATGGCGTTTGTATATTCATCACAGATAGAAGAAGAAATGCGCATTGGTATGAATAACACGATCGCTCATAATTACGGGTATACTACCTCCGCTACAGAGGCTGTTGATACACTGCAGAACAATTTCGAGTGCTGTGGTGCTAACTCGTATACAGACTACACTTCTTCAGACCGCATGGTTGAGTTAAGGCAAGCCGTTCCATCATCTTGCTGTAGGACAACCGAAACGTGTGTAGTAGGCAAACCAGGCGAACCGATCGTTCTGCTAGATGTATGGACAACTCATAAATTAAAAAGTTCTCAGAGGGAGAAAGTGAGGGAATTTATAGCTTTCACAAACACCGGGGAGAAGACAGCCATCTATTGCCTTTCTCAACATGAATGGAGGCTTGACGTCGCATCAGATAGTTACTTCCAACACCCCGAGCTTTACTACAGAGAACCGAAACGTGCTGTAGACAGGAGGGCCTTAGAAAAATTGTACAACAGATATAAAGATCCACACGAAGATGACAAAATATTAGCCGAAGGAGTAGCTAGGTTCTGTGATGATCTTAAGTTAGACCCTGCCAGTCGTACAGTTCTTGTCTTAGCTTGGAAATTTCGAGCTGCTACACAATGCGAATTTACAAAGAAAGAATTTGTGGAAGGAATGACAGATTCTGGGTGTGATTCTGTAGATAAACTGAAGATGAAGCTTCCCTCACTAGAACACGAGCTCAGAGACGTTAATAAATTTAAAGATTTTTACCAATTTACATTCAACTTTGCAAAAAATCCTGGACAGAAAAGTTTGGAATTAAGAATGGCAATAGCATATTGGAAAATTGTACTGCCCGGCAGGTTTAAATTTCTTGAACTATGGAGCCAATTTTTAATTGAACACCACAAGAAATCAATACCTCGAGATACATGGAATCTTCTACTAGACTTCAGCAATATGATTGAAGACGACATGAGCAATTATGATGAAGAAGGTGCCTGGCCAGTGCTAATCGATGACTTTGTGGAATATGCCAAGCCTTTACTTCAAGGCAAGAGTACGACGGTTTGACCCCCAGCCCACGACAGAGCAGGCCCACCACCTCAGTATGCATTTGTAGCAATTCACACAAGATAGGTCTTAGATGTTTTGTTGCACAGAACAATAATTTTTTTCTCCAGCTTCTAATGGGAAAAAATATTGTCGCATTCAAGCCTTAAAAGCGGTGAAAACGTAACCAAAAGAACTCAAGATATTTGAACTCGCTCCTGTAAGGTGTGAAACAACTACTAATCACGCACCGACCTGAAGATATTGACAGCAACAAAGGTCCTGCAGGGAAAATGCTATCAGTACAGAGTTATTCCTTACCTTGGCCTGACATTGCAACCAGTTTGTGATACAATCAACACCTATTCAGATTTTTGTTGTTGACAGAGGATGGTTGTCCGTATGCTGATACGTGTATCCCAACAAAAATCAGCCCAATCACAACAAAAAAAACAGTCTGAAACTAGCCACAAAGTCAATTTTTACCTTAAAATAATCGTAGGAAGGCCATATAAAAATGGCCTACTGTAGAAATGCTTAATTGTATTTAATTGACATACAGCCAAGTTTCTCCGGTTTCTGAAATCTGAGGAAATATAAGTCTAGCCACTTTCTTGCACACTCGTAGTTTGCAAAGCGGTAAATTTCAGAAAATTCCTACATATTTGATCTTGTACAGATGGTAAAGTCTTGCAATGTCCATTCTATGCCTCCATACTCCTGCCGTGCAAATACAATTGAGCACACGATGTCTTGTGAGCTTGTTACCTGTTTAATTCCTCAAGAAAGTATCTTAACAGTAAAGTGAATTTCCCTGATTAAATTTCAAACCGTCTACAACTATAGGAATGAAAAATCTGCTTGAAAGTTTGTAGACTATCATATGGATCGCTGGTATGGTATGTACATATTACGCACAGTCGACCACGGAGATCATGTAACCTAAAAATTGTGAAATTCTTGATCTGGCAAAAAGTAGCAC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|DCUN1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00335	Tetraspanin	Tetraspanin family	Family	Interproscan
PF03556	Cullin_binding	Cullin binding	Family	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005176	Domain	Potentiating neddylation domain	Interproscan
IPR008952	Homologous_superfamily	Tetraspanin, EC2 domain superfamily	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR014764	Family	Defective-in-cullin neddylation protein	Interproscan
IPR018499	Family	Tetraspanin/Peripherin	Interproscan
IPR042460	Homologous_superfamily	DCN1-like, PONY binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12281	RP42 RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032182	Molecular Function	ubiquitin-like protein binding	Interproscan
GO:0045116	Biological Process	protein neddylation	Interproscan
GO:0097602	Molecular Function	cullin family protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-