Gene detail

Detailed information of Paelopatides10446 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides10446	PKSB	ctg2097	23139	94268	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides10446

ATGATTGGAATCTTGTTGGACGTCCTCCTTATCCTTTTGAAGCTTATTGTTTATAATGCAATAGCTCTCTTCAGAATATTCGTACCAGTCGCACAAAAGTCCATCGATGGCAGCATTAGTTTAGTAACGGGTGCTGGCCATGGTATTGGCCGTCTGACTGCTTTAAAACTAGCAAAGAAGGGTGCCACTGTGGTGCTATGGGACATCAATGAAAAAGGTAACGATGACACAGCACAGCAGATCAGGAGTGAGGGCGGCAAAGCACATACGTACACAGTCAATGTCACCGATAAAGAAAAGGTCAAAGAAATTGCTAAGAAGGTTAAAGAAGATGTCGGTGAGGTCAACATTCTGATCAATAATGCTGGGATTTTGGTCGGCCAGTCAATCCTAGACCTGACAGATGACCAAATCATACGCACAATGAATGTAAACGTAATGGCACACTTCTGGGTTGGTGTTGACCTGATTGGACCTCTTCCAGAAACTGCACAAGGGAACAGAATGGGATGTGTGGAGGTACTAATATCCGATCAGGGTCGTGAGTTTGTAAATAATGTTAATCGGGAGCTATTTCTTCAACTGGACATCGATCATCGCATTTCATCTGCGTATCATCCTCAGACGAATGGGCTTGTAGAGCGTTTCAACCAAACCCTTCAGAATTCCCTCAGAAAAGTAGTCAATGAAGATGGAAATGACTGGGATGTCCATCTTGACAAAATCTTATATGGATACCGTGTATCATCCACCGGGCTTTCTCCATTTGTTGTTATGTTTGGAAGCTCCTTCCACTCACAGAGTTTTAAAAAGGGAGAGTTAGTCATGGTGAAGAATGCACGAAAAGAAGGTAGAAAGGGTGGCAAGATGGAGCAGGTTTGGTCAGGACCATACACAGTCCATACTGCTCATGACAGCTCCTTACACAGTCTGCAGAACTCATCAGGGAAAGTGCTGAAGAAGAAAGTACATTCAATTTTGTTAAAAAAGTATCACAGCAGGATTGAGGAAGATATTTCTTCAGGACACACAGATATCCAATTTCACAGCAAGCACCATTCACAACAGACTGATGTCAGTACAACAACCGCAAGTATTCCACAAGAAACAGGTGTACCAAACAGAGGGAATACATGCTTTGCTTCTGCTGGACTCCAAATGTTAAAGGCATCAGGGATTCTTCAAGAATATCAGCAAATTAAAGATGAACATTGCATCCCTATCTTTGACACAATCTGCCAGGTTATTGAATCTTTAAATATTCAATATTGTGATTCTACTCGCTTAGAATGTGTAGATATTATCCTTGATTCATTTCCAGATCTAAACGATGGAAGGCAACATGACGGTATGGAATTTTTGACCGCTATCATCAATTCTTCGTGCAAGTCATGTGAAGAAGATTGTTCATTCCTACCGTCAGGAATACAAGTTGACACCAAACCAGAGATTCTGGCCCGGCTTCAAATTGTAAGATGGAAAGGGAAAGATCAGCAGAAGAACCAATGTGAAGTCATTGTTGATCAGTCACTGATGATAAATGGCACAGAATATAATGTTAGGGCAATCATGTGTCATGAGGGAGCTACAATTGATTCTGGACACTATAAAACGATCTACAAAGATGATTCGAAGGGCCAGTGGGTGATAGCCAATGACAGCGAGTTGCAACATGTGAGCGAAAGGGAAGCACTGAATTGTTTCAAGACAGAAGTCTGTGGAGCAATTTATAAGAGAGCAAATTCACCATCATCTCTGAACAACGTTGATAGTGAAGACAGTAGAGAAGATCTTGGTGAACCTGTCACAACCCAAACTGTAAATTTTGAGAATATGTTCAAAGAAACACTCTTGACAAGACTAGACGATAAACAAGTTAAATCAACCACCGGTTGCTGGAATAGTCACAGGTCAGCCTATTTAAATGAAGTTCTGCTACCGGAAGCTTTGATCTTTGTTACAATGAAAGTTCTGGCACAGACAGAGAAGGATGCAAGGACAATGTTTGTTGTTTAG

Transcript

Paelopatides10446

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24322	PKSB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005811	Cellular Component	lipid droplet	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-