Gene detail

Detailed information of Paelopatides00324 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides00324	PROTEIN CBG26694	ctg10227	29600	97555	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides00324

ATGGAGACGACAACTTGGGTTTTAATCGCTTTTGTTGTGGCCATCGTGTTTTTGTATGATCATCGGCAGAAATCATACTTTAAAAAGAGGGGTATACCATGTGATACACCTTTGCCATTCATTGGACATTACCACAAGATCATAAGAAAGAGCCAATCTTTCGATGATTTCCCGCTGAACAAAGCACTGACTAGATTGGAAGGTGAACGATGGAAGAAAGTAAGAAACACAATTACACCAGCATTCAGTGCCAGCAAAATGAAACCGATGCTAAGGCTGGCTACGTACTGGTCAGTTCACCTAGCCCCAGAATCACAGGAACTCACCACCTTTCGAACACCATTCGGACGCTATTGTTTCCAAAGATTGCCATTTGGGTTGTCAATCAGCCAGGACATCTTTCAACAACATATGGACAATATTATTGAGCAGGTACCTGGTTGTGTTGGTATAGCAGATGACATAGCAGTCTACGGTCAAACTGAGAAGGAACATGATGCCAACCTGATCAAACTCCTTGAGGTAGCAAGGCAAGAAGGGTTAGTCTTCAACAGTGCTAAGTGCACTATCAAAACCAATCAAATCAGCTTCTTCGGCTCAAACTACTCGGACAAAGGTATCAGTCCCGATCCCAGCAGAATCGAGGACATTCATGCGATGCCCACCCCACAGGACAAAGAGGATCTTCAGAGGTTTCTCGGTGTCATGAATTTTCTCTCACCCTATATTCCCAACTTCTCCGAGATGGCAGCACCGCTCAGAGAGTTACTAAAACAAACCACACCATATCTGTGGCAGGAAGATCACCAAGCAACCTTCGAAGCAATCAAACAGACAATTTCGGCTGAATCATGTCTGCAGTACTACAACCCCAATCTACCGACTATTCTAGAAGTCGACGCATCCCAGAAAGGTTTGGGCGCATGTCTCCTTCAAAACAACAAACCTGTTGCATTTGCATCCAAAAGCCTGTCACCAGCACAGGCAAACTACTCCAATATTGAGAGAGAAACATTAGCGCTCATTTTTGGAATAACCAGATTTCATACTTACCTGTTCGGCAAAGAGTTCACGATTCACACTGATCACAAGCCACTAGAAATGATCTGGAGAAAACCACTTGCGAGTGCCCCTCCAAGACTTCAAAGACTACTTATCAAAGCACAAGGATACAACTTTGATATTGTATACAGACCAGGCAAGACCATGATTCTTTCTGACACCCTCAGCCGACTTCCCAACCCACAAAAATGCGAAGACATACCTCTGGATCTTCGAGTTGAGGAAATGATGATCGACGAACAAGAAGAATCTGTCCAGGTCGACTTAATCAACTTTGGCATAAGTAAACAAGAAACACTACGCACGGAAACCGCTTGTGATCCATGTCTCAGATCACTATGCCAAATCATCACTGCAGGATGGCCAGACACAATAAAAGAATTACCACAAGACCTGCGACCATATTGGTCATTTCGAGATCAACTCGGAATTTCAAATGGAGTCATCTTCAAAGGAAGACAAGTCGTAGTGCCGAAACCTCTTCAAGCAGACATATGCAATCAACTACACACAGGTCACATGGGAATCGAAAAGACTCGTCGCCTCTCCAGAGAGTCTGTCTATTGGCCCAACATTAACAGAGAGATTGATCAAATGATCAAATCATGCGAAATATGTCAGGAAAGCCAACCCTGTCAGCAAAATGAACCACTGGAACCACATGAAATACCTTCAACCCCTTGGACCAAGCTGGCAACAGATCTGTTCCAAATTGGAAAGGATAACTATCTGTTGATCACAGATTACTATTCCAAGTACCCAGTTGTACACAAATTATCCAACACTTCAAGCGCCACCATAGCAAAGGTCACTGCAGAAACATTTAGCCTCTTCGGACCACCAAAGGAAATCATCTCTGACAATGGCCCCCAATTCACTGGGAAACCATACCAGAACATGTGTGATGATTGGGCAATCACCCACAACACATCTTCACCAAGGTATCCCAGGTCAAACGGTTTAGCCGAGAGGATGGTGAGAACAGTAAAAAACCTCCTCAAGAAGAGTCAGAAGTCTAACCATGATGTTCAAATAGCTATGCTCAACCTTCGAATCACACCTATAGACTCAAATCTGCCATCGCCTTCAGAGATGCTCTTCGGAAGACCCATATGTTCCAATCTGCCCAGCTATCACCCCCCGGAAACACTACATACCTCTGAAGAAACACACAGAAAGCTTGTCATCAGGAAAGAAAAAATGAAAGAAAGCCACGACAAGAAAAGCGCCGGACCAGAGCTTGCACCATTGCATCCAGGACAGAAAGTCAGGATCCTTGACTACGAGAAGAAAACATGGACACCAGGTGAAGTCACCAGAGTCGGACCTGAACCCAGGTCATACGAGATCGCAACTCCAAATGGTGCCAAACTCAGACGTAATCGCTCACATCTGAGGGAGCTGCTATCAAGCAATGACAAAAGTAGTATGCTGACGCTACATCAAACCTCGCCCAGTCAAAATAGACTTGCTACAGCTGAACGGCAAATCAGAGAATCCATACAATACGAGCAAACACCAGACAAACAGGATACTGGACAGCAGAGTCCAAACAACTCACTCAGTCACCAGAAGAACAACACCCCCCAACCACCAGACAATATAAAAACCTCCAGATTGTATGGAAACATGACTATGGACTGCATTGCTAAAGGAGGGTTTGGACTCCAAGTTGACTCACAAGAAGACCCTAACAGTCCTTTTGTCAAATATGCAAAGGCATTTTTTAACATAAACCTTTTAAGCCCAGTTTTTATACTTGCAATGTTCGTCCCTCAAGTTGCTCCTATTTTCAACTATTTTAATATTGGGATCGCTCCAAGTAAAGCCAAGAAGTTCTTCATGGACGTTACCAAACAAGCGATGCAAATAAGACAGGACCAGGTCAACAAGAGAGTGGATCTGTTACAGTTGATGGTAAATGCCCACAAGACTAACGAAGGTAGCGATGAAACAGAAGATATTCCTGAGATTGCTGGAGTAGAACAGACGGCTCACCTTAAGGGTGACCTCACTGTTGCAGAAATCATGGCTCAATCCCTCGTGTTTCTTTTAGCTGGCTATGAAACCACAAATGTCGCATTATCCTTTGTTTCATACAACCTTGCTCTCAATCCTGAATTACAAGAGAGATTATTTGAAGAGATACAAGAAATGGCACCTGATCGAGATTCAGTAAATTATAACACTGTTAACAAGATGGAGTATTTGGACATGTTCCTCAATGAAACACTAAGACTGTATCCTCCAGGTGCTGTGGCTGATCGTGTCTGTCAGGAGCCTGTTACGATTGGTGACATTCATTTTGAAAAAGGAATGCAAATCTTTTACAATATCATTGGTTTGCATTATGACCCTGACTACTGGGAGGAACCAGAGAAGTTTGATCCTGAAAGGTTCACCAAGGAGGCCACAGAGAAGAGACACCCCTTTGCATATCTGCCGTTCGGTACAGGACCCCGCAACTGCATCGGGATGCGATTTGCCAAGCTGGTTCTCAAAATGGCTATTGTCAGAGTGGTTCAAAATTTCAAGTTTGAGCCTTGTGAGAAGACAGAGATTCCAATTAAGTTTGGGAAGAGATCAGTTGCCCCGGCCAACGGAATTACACTTCGTGTTATTGCCAGAGAGTAA

Transcript

Paelopatides00324

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR002403	Family	Cytochrome P450, E-class, group IV	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-