Gene detail

Detailed information of PMEG.utg000001l.41 in Placopecten magellanicus Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PMEG.utg000001l.41	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	chrom09	57480376	57482520	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PMEG.utg000001l.41

ATGGATGGTAATTCAGGAGACGGTGCCGTGGACAGCCTTGGAGACTCCATGTTTTCAGGATCAGTTCAACTAGATGGTAGGCATCTTTTCTTTTTGACATGGCAGTCGACTGGGCATGTACATTTAATTTCCAATGGATTGGATTTATGGTACAAAGTACATGCAATAAGGAAAATCAGTTTGCTTCCATTTTATAACACATGACGCCACACAGTCAAGATTGTCAGTGGTCTACAGTAAAACTTGTTACTGTAATGAATATGTTTTTTGCAATGCTTGCTGATAGTTACGTCATATTTCAGAGCTTTTTTGGGCGTTGAAATTCTGCCCCATTCAAGTTTTTCCCAAATGCTCTTAAAAAATGTCCAATTTAAAAAGAAAAATAAAAAAAAATAATCCCACTTCCAAAGCCAACGAGCCCCATCCCCAAAATAGTGAGAGAGAAAAATCTGTATTTGTATCAACCCTCCTGATGTGATCCAGACGTTGTAGTCTTCGTCTCTCTTCTACATTTAACCTCAAAAATATTAAATAGTATGTATGCATTGTTAAAAATCTATTTTGTTTTATTGTGATCATTTTATTGCTAATAGTACTGAAACTTATATATTGAAACTTGAGATATGGGCAGATCTGGCCGAGTGGTTAACACTCCGGCCTTCCACGCAGACGGCCGGGGTTCGATTCCCGGTCATAGCATGGAATTTCAGAGAAAGTGATTTTCTCCTGCCCCATAACTCCAACACTGTGCCGTAACATTCAATTGAGGTAGCACTAAGAAAAGATGCCGTTGGAAGTACGGTCCCATCACAAAACAGAACACAATACATCTCCAGCACACACACACTCATACACACATATGGAGATATTAGCCAGGTGGCATATAGGACTAGTAGTTAGCGCCTGATATTAAGGCAGCTCCTGCAAAATCCTCAAAATTGTATTGATTAATGTATTGTATTGATTGCATGAATTGTATATCTATGTACTGTAAACCGCCTTAGAGTGGCTTAATCTAGCTAGATAGGGTGCTATATTAAATGTCATATACCATATTTATCACTTTCATCCACAGATGGCGATGACACTTTACAGTCGGTTGAAAATGATGACGAACCCCGAGATAATGAACCGCTAAGAGAACAGGTCAGATTAAAATTGTCATCACAACCCTGTATAAGACCATTGCATAGTATAAACTATTAATGAGGACATTGTCATATCATGACATTTTGTAATGACATTTTCAGGCATTTGTTAAAATATGTGTAAATCAGTTTACTGTTAATTATCTTTGGTAATTGTTCGATACACATTTCATCACAAGATGAAAAACTTATTCTAAATGTCATGATTATCAAAAAAAATATTTTATCCTAAATTTTGTTGAAGATGATCTATCGTTGTCATGATGTACAAATTGTACAGTACATGTAATAACTTTTCAATTTGAATGCATATATTTTTTCGAATGTCAATCAAGTATTACCAGTTGATCTTTGAAGTCCTTCTGACAATAACATACAGTAGATGGACTTGTAATTGACCTGCAAATATTTTTAAGACTTGTCTTCAGCAGACCCTTAATTCTGATAGTAAGTTCATATGTGCCATATACATTCCACATAATTGCCGTTATTTTGATATGGTTATGTTGACATGTTGCAGTATTTAATTATCTTTTATTTCTTACAGGACCGATTTCTTCCCATTGCAAATGTTGCAAGAATAATGAAGAAATCAATTCCAAAGTCTGGTAAAGTAAGTATCTCCAAATCTGTACTCGTGTTTTTAAACATTCAAATAATAGGATCGGTCTACTTGGAGTCAAATTGGCTGAATACACATGTATTTTCATACTATGCAAACACTTTACAAGCCATAAATTGTTTGTCATTATTCAAAATCATGAAAGAAATTATACTTAAATATTGATGTTGTCTCTATTAACGTTTTGAAAAACTAATATTTGTTCAGTTTCATAGATACCTATTTGAAGCAATTTAAGAATTTAACGCAGACCCACTTGATGTTTACAATATGCTATATTGTTTATTTTAGATCGCAAAAGATGCCAAAGAATGTGTTCAGGAATGTGTGTCTGAGTTCATCAGTTTTATTACCAGCGAGTATCCTTTTGTTTAAATGGATGGTAATTCAGGAGACGGTGCCGTGGACAGCCTTGGAGACTCCATGTTTTCAGGATCAGTTCAACTAGATGATGGCGATGACACTTTACAGTCGGTTGAAAATGATGACGAACCCCGAGATAATGAACCGCTAAGAGAACAGGACCGATTTCTTCCCATTGCAAATGTTGCAAGAATAATGAAGAAATCAATTCCAAAGTCTGGTAAAATCGCAAAAGATGCCAAAGAATGTGTTCAGGAATGTGTGTCTGAGTTCATCAGTTTTATTACCAGCGAGTATCCTTTTGTTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00808	CBFD_NFYB_HMF	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003958	Domain	Transcription factor CBF/NF-Y/archaeal histone domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR027113	Family	Transcription factor NFYB/HAP3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016602	Cellular Component	CCAAT-binding factor complex	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-