Gene detail

Detailed information of PE_Scaf9989_1.2 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf9989_1.2	SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER	Superscaffold8	37924984	37933633	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf9989_1.2

CAAGTACGTTATGCAGTGCACGCATACAAAATGGGGCCGTAGTACATTACGTGGTGCATGATAGCTCCGGCGACAGCACACAGTGGACGGACATAACATGGCGCCGGCATCGGAGGCGTCGATGCGCTTTCACTGGGCCGACTACGTCGTGTTTTTCCTGACAGTGGCCGGGTCGACGGCTATCGGCCTCTACCACGGCATCACGCGGCGCCAGAACGCCAGCATAGACGAGTACCTGCTGGCCGGTCGCCGCATGCCCGTTCTGCCGGTCAGTCTGTCGCTCTACGTCTCCTGGTTGTCCGCCATCAGTTTCCTCAGCGACCCCGTCGAGGTGTATTACCATGGCGTCATTTATTGGATGATTGGCCTGGGCTACGCATTCGCACTGCCGCTTACTGCCGCCGTCTTCGTGCCGAGGTTCCACCGAATGCAGCTCACCAGCATTTTCAAGGTATCGTGATCGTGGTGTCTTAAAGAGAGGGACTTTGTTCCTAGTTTCTTCCATTTATTAATTAATATAATGGTTTTAATCCTATAATAACTATGGTGAATGTATACTGCCCGCCAAATTGTGTTTAGTTACTCCGTAACAACGTTCGAAATTAGGAAGATACGACCCCGGAGCATGTTGGAATAGTAAACAAAAAAAACATTCTCAAAACAAGCTTTATTTTCAATACGGCCGAGTTGCGCTGAGTTAACTGCAATACCCTTGATGTTCAACGATGTGCCATTTTCCTACGTTCTATACAGCAGACTTCCCAGTACAAATTACTAATGCCAGGTAGAGGAACTGACGTCGTTCTCTAGGTGGCGTTACTGGAGTTACGTTAAAGCGACGTAATCTGTTCGTCTCCCCGGAATTAGAGGGCGTAGTAATTCGTAACAGGAAGTCTGCTGTGTTAAACGTGGTGAAAGTTGAACATCAAAGGTATGGCAGTTAACTCTGACTGATTCGGCAGTATTGCCAATAAAGCTTGTTTTGAAACTGAATGTTTTGTTTACTATTTGAACATGTACCCGCGGGTGTACCTTCAAATTGCGACCGTCGTTATTAAACACAAGCTTATTAAACACAATTTGGTGGCCAGTGTACGTTCAACATAGCTAGTATAGTGTTAAGCACATTTACCAGGAAAAGACTACTTCCTAGGGAATTAGTTTAAATTCCAAATACTGCAGTGGTGACATATACTGTCCTTCGTTTATTGCTCCACGGGAAAGTGTAAGATTCTAAAAATATTCTACAAGGTGCTGTTTCTTATATCGTTTGGCTTGCACCAGAATGAATTTGTAGATACTTGGCTTCGTCATATTTTAAAGGTTCCTTCTACGTGGATAGATGAAATGTTATCGGAAGTGAAGTGACCTTGATAAACCACAATGTATACCCTCTGGGACAAATAAGTATTTCTTGTTCCTGGTAGATAGTAGATGTAGTAATCCATTTTGGAACTCCCAACACGATTAATGCAAAAGGAATGGACATTTATGAACAACAAAACACCAACCAAGCAATGAATGAAACAACACTGCGTAATCATGGATGGTGCTTAGGCCTACTTAACTGCATAAACAGAAAATTGCATGTCAAATACCTATCGGTCATTCAACTGTGTAGGCTGTGTATTGAGTTGAAAAATAAGAGAGGTCCATAAGTGTTGTTGATGATAAATCCCACACAAGCTTAACCAAGCGATAAGCTTAAGTGAATGTGTGACAAATATTGCGTAATGCTGGCAAGGTTGATACTGTCATGTATCAGGATCGTTATAACTGGTACGTTATACAGCTACTTACTACAGTGAGCTCTTACACCGTTGATGGTAATAAAGGGTTGTTGTCTTCCGGTAAAATTCGAGTTTCACATGTCTAGTGTTTCCAGTTCCAATTAAACAAGCAATATGCTGCTTTATAAAGCATAACATGGTGTCAGAAGACAAACTACACAAACTATTAGGGTAGGATGTGTTGGTCGGAAAAACTGTGTTGGTGAAGTTTGAAGTGACGACTAAAAAATTGAACTGAACTGTGTGTCAAAACGTCGAGTCACTGTCAACGACTGAAAAATGGAATTTTTCAAGCCACCAAGTAGTATTGCGTTCGATGCCAGCAACTTAGATGAGGCATGGAGAAGTTGGGAGCATCAGTTTAGGACATTTTACACAGCGTGTGAATTGAACAAGAAGCCTAAAGCTGTCCAAGTGTCCATACTACTACATACTGCTGGACCGGAAGCCCAGGAAGTATTCAACCAGTTTGAGTTCAAACCAGCAGGACCTGCTAACGTCCCACCAGCAGAAGATAGAGACAACTGGGAAACGGTGCTAGACAAATTCCGTCACTACTGCAAACCACGTAAAAATACAGTTTACGAACGATATTGTTTCTGGTCTCGCAATCAAGGCAATGGGGAACAAGTGGATCAGTGGATCAAGGACTTGAGAATGAAAGCTAAAATGTGTGAATTTGGTGACCAGGAGGATCTGATGATCCGTGACAAGATAGTGTTCAGCGTCAATGACGAGCGTGTTAAAGAGAGACTTTTGAGAGAGTCAGATATGTCGCTAGCTAAGGCATTAGATGTGTGCCATGCAGCCGAGACGACAAGAGCGCAACTAAAGGTCATGGCGTCTGAAGGAAAGCCAGAAGCTAAAGTGAATGTAGCGAAGCAGAGATCTCGTTCAAGCACGTTTAGCAAGGGCTCCCATGCAGTTGGCAGGGGTATCAAGGGAACTAACAATGACACTGTGGGTGGTTATAATAGTACACCGAGACCACGGGCTACACAGGGAAGCATTCACTGCAAATTCTGTAGCAGGTCACACCCACCAAAGTCATGCCCTGCGTACGGTAAACAGTGTAACCGTTGCAAGGGGTGGAACCACTTCGCAGTAATGTGCGAACACCACCGCACTGCTACAGTCGATAGGAAGGTGCGGATGGTGAACAATGAACAATGTGAGAGTAATGAATGTCTGTATCTGGGTTCGTTATTCTTGGACGTGCATGCACACACTACTCATGATGATGACTGGATGACGAAGATGATGATTGGCAGCCAGCAGATAAGCTTCAAGTTGGACACTGGCGCACAGGCGAATGTGTTGCCTATGACAATCTACGAGACACTAAAGCCGAATGCAGCCTTGCAGCCTACAAAGACGATACTGTCGGCATTCGTGAATGACGTCAAAGTGAAGCCAGCCGGCACGGTCAAGCTTCTGTGCATACCAGAGAACGCGGACAAACCGACACTGATCGAGTTCTTTGTCACTACGCACACCAATGTGCCACTACTTGGATGTCGAGCGTGCGAGTCATTGGGACTTGTCAAACGAGTGGGCGAGATGTCGCGTGAGAAGCCACTAACGAGTGACACTCTGATGAACGAATATGAAGACGTGTTCACTGGAGTTGGAGAACTTGAGCATCCGTATCATATCGAGCTGAAAGAGGACGTACAGCCGGTAGTCCAGGCAACCAGGAAACTTCCATACACCAGAGTGGAGAGTTTAAAGAAGGCTCTAGACAAGTTAGAGAGGGATGGAATCGTCGCAGATGTAGAACAACCTACACCATGGGTGAATAACTTGGTCATAACGGAGAAGCGGAATGGATCGTTGAGATTATGTCTTGACCCGAAACCACTCAATAGAGCGATTAAGCGTGAACATTTCGAGATCCCGACTCCTGAGGATGTGCAGTCGCGTCTAGCTGGAAAGAAAGTATTTTCAGTGATAGATATGTCGATGGCGTACTGGCACGTCAGACTGTCGGATGAGTCCAGTTACCTCTGCACGTTCCACACGCCATGGGACAGAAAAAGATTTCTGCGCATGCCGTTTGGCATCAGTTCAGCCAGTGAAGTACTGCAGAAACGCATGCTACTAACGTTTGGTGACATCAAAGGAGCGTACGTGATAGCCGATGACATCATCGTCGCGGGGGATGATGAACAAGATCACGATGCCATCATGCGTGCTGTTTTCCAGAGGGCAAGAGAACGAAACGTGAAGTTCAACTCGTCAAAAGTGCAGTTGAAGGTCAATGAGGTGCTGTACATGGGACATATAGTATCGGAAGCAGGCCTCAGCCCAGACCCTAGCAAAGTGAGAGCCATCGTCGATATGCCACTGCCTAAGGACAAGCGCGCAGTCCTGAGGTTTCTGAACGTTGTGAAGTATCAGGCAAAGTTCACCCCGCGAGAGTCGCACATCACTGGTCCTCTACGTGCGCTGCTGAAAGAGGACGCGGCGTGGTGTTGGACACAAGAGCATACAGATGCAGTGAACGAGTTGAAGACAATTCTAAGCAGTTTGCCAGTGCTGAGGTTCTACGACGTGAACAAACCAGTAACGTTGCAGTCGGACGCGTCAAAGAGTGGACTAGGGGCGTGTCTTCTACAAGAAGGGCAGGTTGTTGCTTATGCGTCAAGGGCATTAGTCGGTGCAGAGCTACACTACGCACAGTTGGAGAAAGAACTATTAGCGGTCGTTTTCGCGACTTCCAGGTTTCATCAGTACATTTATGGCAAGGAAATCGAAGCGCAGACTGATCATAAGCCGCTTGAGATTATAATGAAGAAACCAATCGGAAACGCAACGGCACGCGTACAACGAATGATGTTGAAGCTACAGCGATACGAGATAAACCTGTCATATGTACCAGGGAAGCTGCTGTACGTAGCCGACGCTCTCTCACGTGCTTACATAGAGGGTGAGCCAGACAATGAGCTCATTGACGATATTGAGATTATGGTCCACAGCGTTACAAAGAACTTCCCAGCAAGTACAGGGCGACTCGAGCAAATTCGAAGTGCTACAGCCAATGACGTGACTCTTCAGCGACTACTTCAGGTCGTGATGAACGGCTGGCCAGAGTCGAGGGCAGCTGTACCAGAGGACGTGAGACCGTACTGGAACATGAGAGATGAGATGAGTGCAGACGACGGACTCGTGTTTGCAGGCGAACGAATTGTCATTCCAGAGTCGATGAGGTCGGACATGCTGGAAGTGCTGCACGAACCACACATGGGGATGGAGAAGACGAAATCTCGAGCTAGATCAGCTATCTTCTGGCCGGGAATGTCCAGAGCAATCGAGGACACTGTCTCGAGGTGCAAAACATGCCTACAGTTCGCCCGGAGTAATCAGAAGGAGCCGATGATAGCACACGAAATCCCAGACGGCCCGTTCCGGAAAGTCGCAATGGACATTATGTCGTTCAAAGGTCGGGACTACCTAGTAGTGGTTGACTATTATTCGAAGTATCCCGAGTTGGCACTGCTCGAGAACAAGACAAGCGAATCTGTCATCTCGCATGTTAAGAGCATCAGTGCACGTCATGGAATACCCGAAGAGATCGTAGCAGACAACCAACCGTTTGGTAGCTATAGTTTTCGGCAATTCGCGAAGAGTTGGGGTATCACAGTGACTACATCGAGCCCAACATATGCTCAATCGAATGGGCAGGCAGAGCGAGTCGTGCAAACGTTGAAATCGCTCCTCAAGAAGGCAGACGAAGAGGGTCGTGATCCCTACGTAGCGATGCTAGAATACAGGAACACGCCGATCAGTGGACTCCGCTATGCACCGGCACAACTGGCAATGAGCAGACTACTGAGGTCAAAGTTGCCGACAACCAAAGCCGTTCTTGAGCCGCGAGTCGTAAACGCGAAACAGGACTTGACAGACAGACAGACACGGTTCAAACAAGACTATGACCACGGTGCTACATCATTGAAGCCGTTGAAACCTGGTGATGTAGTACGAGTCCAGAGAAAGTGGGGCTGGGATCCCGCTATCGTTCAGCGGACACACGAGAGTCCGAGGTCATACGTGATCCAGCATGAGGGAGGAGAACTCCGTCGCAATCGTCGTCATCTACGGAGGACACGCGAGCAGCCGCCGCTGATTCTTCCTCAGATGGACGATCCCGACGTTCGAGGAGAAGGTAACGCTCTTCAGATGCCGGTACCGCCAGACGTGCCATCGCCACGAAGACTCGTCGCTGTGCCGCCACGAAGAGTCGTCGCTGTGCCGCCACGAAGAGTCGTCGCTGAGCCACCTCCGCAAGAAGAGATTCCACAGAATGAACGATTCTCTAGATACGGTCGTGCAATCAGAAAGCCTATGCGATTTGACATTTAATTGTGTTTTTTCAATACTATTTGACATTGGTAGTATTATTGATCTGTTTTGTAAGTAACCATTATGTGACATTCTATGTGATTTTTAATAGTCGATATAATGTGACTTTTAGCCTAGTTTGCTACTCGTTTGATATCGATTTTTCCACAGCGAGCATTCGTTAAAGCTGATGAATGTGTTTTTGAGTTTATGAATACAGTTTTTTTGAGTCTTAAAGGAGGGATGTCATGTATCAGGATCGTTATAATTGGTACGTTATACAGCTACTTACTACAGTGAGCTCTTACACCGTTGATGGTAATAAAGGGTTGTTGTCTTCCGGTCAAATTCGAGTTGCACATGTCTAGTGTTTCCAGTTCCAATTAAACAAGCAATATGCTGCTTTATAAAGCATAACAGATACCAAACAAATTGAACCTTGCGTACATGGTTCGCATAAGTTCACATAACACGAAAGCAAAAAAACATTTAGCTAAGGTTCACTCCCCCCCCACCACCACCACGAGTGGCGTGGGATTTAGCGTCATTTTGCTTTTACACATCTTTCACTCGCTACGTGGCTCCATAGCAGTAGTTTATGTTTCACCCGATGCTTGTTAACGACACATCCCCTCCTCTGTAATGCTTAACGTATTTTTGGATGTTTCCGAACGTATGCAACCACTCCTAATCAACTGGGAACACGTAACATATTATCTGATATGACATCATAAGTTGGGGTGTTGCATGCATGGTGTACTCCAATTTATTTTTAAGATTTAACAAGATTGCCATCCCAAAGTTAAAAGATCCAGACGGTTTGTGGACAAGGAAGTCTTTGTTATCGAGAGTCCAGTAGTTTTCCACCTACGTATAATATACGTATAACTTATCCTCATCAGAAGCTGTCAGTGTTATTTTTAAGCATATTCGCGCTGCTAGCTTTAACACAATCATTAGATAATTTGTTCCAGTCATTTCTGTTCCCCTGCAAGAATGAGTTTTCACATCCAACCGACACAGTTCCTAGACTAATGCTGTCTTGTGCCCTCCGGTTTTACTATCTTCTTTAAGTGTGAAGAATATAGTTATATCAATATCTTCATAAACATTCAATATTTTCAATGTTTCTATTTGGTCTCATCTTAGTGTACTAGGCTCTAGTGTTGCCAACCCACATTCTATTAAATGGCTTTCATAACTAATGTATTTCACTTCAGAATCAGTTTGCTCGTTCTAGTTGTACTTTTTCTAGCTTATCTATGTCCTTCTTACAATACTATGGTCTCCATGCTTGTATGCAATATTCCAAACGATGCATAACAATTGCTTTGTATAGTGGTACAATTAATTGTTTCCTTATAAGTGATATTTCTCCTAATTAGCTCTAGAATGTGATTCCTATTTGAAGTAGCAATTCCACATTGCTCTGAAATCGACAGGTCAGCTGTTTTTCCTAAATTCTTTCTTTTGATGGATTTTCCTGATATACTATCCCTAATTATATATTCTTTATGCACGTTTCTATGTCCTATGTGCATGCATTTACTTATCGAAAAATTAAACAAGATGTCGCATTTTTCAGATTATAAAAAATGATGTCCAATTTGGCAACATCATCTTGTAAAATGTACATATCTACATTTCGTTAAACCTTTCTGACCACTTCGGTGTCGTCTCTGAATGTGTGCATTTTGGTTGATATATCTTCCTCCAAATCAAATCAATATATATTAAGGATAATATACATCGCAACTCTGGTCCCTGTGGCACTGGTTTCCAGTTTGTAATCTTTCCTTCAACTATTACTCTCTGTATTCTGTATGTCAACCATGCTTCCATCCAACTGCTCACACCGTGCCTACACCGTGAGCTTTTATTTTAAGTAACAATCTGAAAATCGGAGCCGGTAACTTCGACCGGTGAGACATCATCTACACACTTAGTACTTTCTTCCAAAAGACATAGGACATTGGCTGGACATTGGCAAGGTCAGAGCATTCCTACTGTATACCTGCCAACTTTTTTAATTCCCGGAGATTCATCAGCGGCACGTATATTATTGTCACATGACCTTAGTGCATTTGTGCAACTTCCAAAACATACACCAAGTGATCGCATCACCCTTCTGGTTTCAGTACCTACAAGACCGGTTTGACCGACGTCTACGACCGATTGCCTCTATCACCTCTGGCGCGGCTACTGTAAGACGCTTGACCTCTGTCTGTGATCGCTCTGTTGATGACTGTTGAGAACACCTTTGTCGTCAATATAACGAAACAGTTCCAAGCGAATACTTATTAATTTGGGCGAAATATAAAAAGGGAACTAATTTAGGGAAACGGGGAAGGTGAGGAATGGAATCGTTGAATTGAAGAAGAGAGGGATGTAAAGATATTGACAACATAGGTGGACACGTGTGATTGGTTGATTGATTGATTGATTGATTGGTTGGTTTGATTGGCTGGCTGGTTGACTGACTGACTGACTGGCTGGCTGGCTGGCTGGCTGGTTGTCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR038377	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR051163	Family	Sodium:Solute Symporter (SSF)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42985	SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006814	Biological Process	sodium ion transport	Interproscan
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf9989_1.2 global RNA-seq network