Gene detail

Detailed information of PE_Scaf9792_4.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf9792_4.7	60S ACIDIC RIBOSOMAL PROTEIN P0	Superscaffold3	15812642	15818856	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf9792_4.7

ATGAAGATGTAAGGTCAGGAGCCACTGTAAGATGCCCTGGAGCCAGAAATGACTGAACCCACCAGAGCTGGCAGTGAGCTGTGACTGACACACTGCCTTCTATGGCTGATTGAGCAGTTCTTAGCATGCAGCTGAAGTTTGAGACAATGTCACATGTCTGTAAACACTCCAAATGGGGTAGCATTGCCTGTTTCACAAACAGTATTGTGGAAGATATAACCATGGCAAGTTATCCATTTTGTTGTAGTTATCATAGATTGTAGCATTTACTACTAACAATAATAATACATTTTTATTTCCACTGTAGCATTATAATACATACATGATTTTATGTTTTAATTGTATTCATAATTATTGCAGAAAAGGAGAAAGCAGAAGTGTAGCACTTATGAAGTGCTTTCCCCTTTCGAAACAGTAATCATAAAATATATGAACAGTTTGAATTATAATGACATAATAAAGTGAACAAAATAAAAGTAGTACTTTTTGGCGTCTTGCATATTTTAGTGTATTTAAACAGCAGTCGATAATATTGTAATACTATGACGCGAACCTGTTTCTCGAAGGCACAAAACCGGATGTGTTGAGACTGCTAGCAATACGATGTTGCTGTTATGAAGCCGTTGTTTCCTATCACGCAGAAAAGGAATTGGGTGCATGTTAAATGATGGGTTGTTTCTTATCACGCAGAAAAGGAATTGAGTGCATGTTAAATGATGAGTTGTTTTTGTAGAATTCTGCCCCACATCAAAGGCAACATTGGCTTTGTGTTCACCAAGGCTGACTTGTCTGAAGTGAAGACAAAGATCCTGGAGAATAAGGTATTGACACTGCAAGTGAAATGTGAATCTGCATTTGTTATAGGGTGTTAAGGTTTACAGACCCTTATTTCCTGTGATTGTTTTGTATTGCTGATTTTGGGTAGCCTCTAAAACATTTATTATCTGAGGAGTTATGAAATATTGGCACTTTCGACTGTACTATTGTTGGTAGACACATATGGTGTATTGTGTCTGCTGCAAGAGGAAAACATTTAAGAATAGCTTGCTCATTCTAAGAACCGTGCTGAATAGCTTGCTCATTCTAAGAACCGTGCTGAAACCTGTACTCCATGTTTGAGGTTGCTGATGTGTGGAGGTGTTTGCTAATAGGTGGCTGCCCCAGCCAAGGCTGGAGCTGTGGCGCCCCTCGATGTGGTGCTTCCCGCACAAAACACGGGTTTGGGACCCGAAAAGACATCCTTCTTCCAGGCTTTGGCTATCCCCACGAAGATCACCAAGGGAACGATTGAGATCCTGGTAAGCCACAGATGCCGTGAAGTGTTACATCCTGGAGATTCTCAAATCACATTAAGATTGCACCAGCATTAAGGCCAGACACGGCAGGTAGATAGGATTATTTTTTTATTTGTGCAAACAGTTCAATTTTCTCTGCCCAATGCATGAATCGTTGCACACAGTAGAATATGCTGAATGCAACACTGAAAACATTATTTATATAGCATAATTATTCCAAGAGATATCCCGTTTCCAAATGCAGAAATCTGAAGAAAAATGTTTTTGAAAAAATGGCTGTCAAAGATTGCATAATGGATTTCATTACATGATATCGACATGCTTGATCCATGATTAAAACTCACTTAGAGGTACGTAATTGTCATTGAAGTGAACTTATTGATAGTATGCATACAAACGTATAATAATCTGGCAGAAAACCATTTTCAGTATTTTTGGTCAAAAAACACCATTTCACCTGGGGTGTCTGGCCTTAAATGAAATAACTTGTAGAATTAATTGTATATGTAACATAAAATAAGTTGTAGTTTTCCAATAGTCTGTATGAGTTTGCCAAAACTACTTTAACAAACATGCAGACATCCTAACATTGATAGCTACCTGGTAGGTCTTGCTGTTCGCAGATTGATTTTTTTAAACGCAATGAGAAAAAACGATTTAAAGCTGTCATCAGATAATACTGCGGGGGTAACGAGTATTTATTGACCAGTATGCTTCTGTCGTCCCCAGAACGACATCAAACTGATCACGTGCCCCGACAAGGTCTGAGCCTCCGAGGCAACACTACTCAACATGTTGAAGATCTTCCCGTTCTCCTACGGTCTTGTCACCTAGCAGGGTCAGTGACCTACGACCCCAGGGGTCACACACTTGATGTAGACTGTCATAGCGAAGTCATGTCCCATCAATTTTTTGATTTTGATAGAGATTATTTTCCTCGACAGATAATCCAAAACTAGTAAATTACATGACATTTACAAACCTATAGATTAAAAAACAATACAAAATGTGAATCAAGTGATATTGTTTCTCAATTTTAGAAATAAATTAAAAAAACTACTGAAGAGATTTCAACAATTAAGATATTACTTTAAAGCGTGAAATCTGAAAGGGTATAAAACTCCATTTTGCAACCTAGTACCCAATCTACTGTGACATGTTACAATTTATTTTGACTTGGGTGAGAAAATAGCATGGTTTGAAGGTGCCAGTGGATTTCCCCGATGGTGTGGTGAAGCTCTTGAAAGCATCATCCATAGCAGATGCAGATCAGTTGGATTGGTTTGATTCATTGCAGTGTATGACTCTGGCACTGTCTTTGATCCGTCCGTCCTGGACATCACAAATGACGATCTTCGCACTCGCTTCCTGGATATAGGCTTACACTGTTACAGAGATGCCATCTCTAGCATTGACGTGCCTTGAAACACCGGCCACCTGTCAGTATCTTATATAAGTGTCACGTATCATTAGGTGAAACTATTCATGATTGTGTAAGTATTGCGATATCTATAGTGCACTTGCGATAGTTTTAAAACTGATGAATGTGTAAATGCCACAGCCGTTATCAACGACTGTTGTTGGGTCACTAAATGAGTAAAATTACCAAATAAAGTTGGGACATGTTTGCGAACAATAGTGCAGTAACACCAGTCTCCTTCAGTTTATCTTGTTGATAACTATCCATAGTTTTGTATCGTAACTTTGATGTTGTGATGCATTGATGTATTACTACACTATGTCTAAGGAGATATATGGCAGCTAGATAGGACATTTTTTTAATGGAAAATTAATGCAATATTTTGTGCCTAAGTTCTGCCAGACCCCATGTTTCCCCCGTTTCCATGACAGCAATCAAAGATGGCCACCGGATAGGGAAATTATAGCATAATTTGGAAACTTTGAAGCTCCTCTAATGCAGTTATCAATGTAATTCTTTATATTTCTTATTTGCAACACCTCATTCTTTGCAATGTCGAATAGATATTTTACGTATTGTCGTTATTCAATATTGTAAAAAGTATATTTCAGTTTTGTTGGTAAAGAATCTATTTTTATAACCTCCATGTTCACCCCATAACTAAACAGAAAATAAAAAAATATATTCTTGACATTGCAGAGAAGATAGCGAGGAACACATCAGTAAAAATGTCATTAATGCAGCATCATTACTTCTAGAGAAATTATTTTCGAAATTGTAAAAACTTAGTAAGCGGGTGTAAATGGCTGTCAAACATTCGGTATGGGATTTATTGCATGACAGAAGCACATTTTATCCATGAATATAAGTTACTTAGAAGTGTGTTAATGTTATAAAAAAGATCTTTATTTAGTAAAAATAAAATACTGTCAGAATACAGCAGAATCACTTTTTTGTCAACAAGTGTCATTTTAGCTGCATGTCTCCTTAATTAATGTCAATTGGTAAAGCGTGGGCAAAAGACACAAATTGCTTTGCTATAATTGTAATTGTAACAGAGATTTGTATTCCTGTCAAGTTTTTTAGTGGACATAGCTGCGGTAGTATTATGCAGACTGAGTGTGTCATTGTGTACAGTGGAACCTCACTATTAAGGTCACCCTTGGGACTGGACAAATTAGCAAGGTGACCGTATTAGCCAAATTAAGTTTCTATACTTTACTGTATATTGAACAAATTTGGGAGTATCCTCATCATCATCATTGTGCAGCCGTAGTGTCCCGTGGTTGAGAAAAGGCCTCAACATGTATTTTCCATATCTGTACTATCCTAGGGTGACCTTAATTGTGAGGTGGCTGTATTACTGAGGTGACTGTAAAGGGAGGTTCTACTGTATATCATGTTGTTTACGTGTAAGTACATGATTGCTGTGTTGGTTTCGGGAAGTAGCGAACGTCGCTAGTGTGTGCCTGGCCATCGGCTACCCGTCTGTTGCGTCAGTGCCACACAGCATTGCCAACGGCTTCAAGAACCTGCTGCCCATTGCTGTCGAGATTGACATCACCTTCAAGGCTGCAGAGATGGTGCGTGTTTGCTGGTTTCACTGTCTTGTCCTAGTTAGTGCCTGTTGTATGTTAAAAGGAGATTTTATGTCTATCCAATTAAAAATATTGCCGAGATGGGCTGAGTTACTGCCAGGCACGGCAGGTAGATATGAATTTGTTTTAATTTGTACAAACAGTTCGATTTTTTCTGCCCAATGCATGAAATGGGTCTTACTGAGTAAAATATATATTGAACTTTTTTCAGCCAGACCCCCGTTTCCATAATAACAAACAAAATGGCCGCCATTTTGCGCAAATATTGAAAAATTTGGAAACACTGCCATTTTTATTGAACCCATATAGTTATAATTCTTGCAAATCCATGTTCCCCATAGATTTTATTGTGCAATGATGAGAGCATTTTTGGAAATATGTTTTTATTTATTTTTATTTTTGTTTGTTAAAATACCTTGTTTTTGGCAACAAATATGACTATATCTTTCAAACTATTCATGATTTAAAAACAGTAGAATATGCTGAATGCAACACTGAGAACATTATTTACATAGCATAATTATTCCCAGAGATATCCCGTTTCCAAATGCAGAAATTTGAAGAAAAAAGTTTTTGAGAAAATGGCTGTCAAAGATTGCATAATGGATTTCATTACATGATATCGACATGCTTGATCAGTTACTAAAACTCACTTAGAGGTACGTAAATGTCATAGAAGTGAACTTTATTGATAGTATGCATAGAAAGGTATAATAATCTGGCAGAAAACCATTTTCAGTATTTTTTGTCAAAAAACACCATTTTACCAGGGGTGTCTGGCTTTAACCGCAATACCCTTTGATGTTCAACTATCAACACAGCAGACTTCTGTTACAAATTATTATGCTGGCCATTTCCGGGTAAACGAACAGACTGCCTCCCTTTAAAACCTCTAGTTGACATTGTTGGACTTCACAATATGTCCATTCTGGCCAGTTCATCATTGTGGACAGATGCTAGGTAGTGGGCAATGCAAATAAATAATGTGTGACTTTCAAAGGTGTCCATTGTAGAAAGGTGTCTGCTGAAGACGTATACTGAATAATTGTGATCGCATTTGTGACCCACAAGTAATAAAATAAATAAGTAACTATGGTTGCTGTTGGTATTATTTTACATAGCCTATTATTTTTTAAGTTTACATTTTAGTAAAAAATCAAAAACTACTGAAGATATTTCAACAAATGATGTATAATTTTAAAACCTATTTTCGGTGGAATTAAAAAAGTGATAAACTCTTTAAAATTGTGCATGCCCACTTTACGGCGGGTCACAATAAGATTGTGATATCATTAGGGGTGAAAATAAACCCCTGGCACTGTGCTGTGATGTGTTGGGTGCTGTGTGTGGAGCGCAGTGGCTGGTCCATTGGACTCGTAATCAAGAGAACCCGGATTCATATTCTGTGCTGTCGAACCTTGGGCAAGTTCGTTCAGTCTACATTGCTCCAGTTCATTCAGCTGTTTGAATACCTGGCTATAAATAGTGGTGGATATTAGTGTACGAATAATCTTCACGCATTAATTACAGCACCGCTGAATGCTTCCCCGAGAAGTGGAGATGGTGTTCGACTGAACATGTCTGCCAGTGAGTAAAGTGTAAAGCGCTTTGAGCAATCATTAGGACTGGATAATGAGCTATATAAGAACTTACCTTTTTTGAAGAAAAAAAAAAGTTTTAGTGTTTACAGAATCTTCAGAACTCGAATGTGTTTCACATTACCTTTATTTTTACCGTGTCGGGCGCTGGTTTCAGATGAAGGAGTATCTGAAGGACCCTTCCAAGTTCGCAGTGGCTGCTCCGGCTGGAGGAGCTGCTCCGGCCGCCGGGAAGGAGACGAAGAAGGAAGAGGAGCCAGAGGAGGAGGAAGACGACGACATGGGCTTCGGTCTCTTCGACTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00428	Ribosomal_60s	60s Acidic ribosomal protein	Family	Interproscan
PF17777	RL10P_insert	Insertion domain in 60S ribosomal protein L10P	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040637	Domain	Large ribosomal subunit protein uL10-like, insertion domain	Interproscan
IPR043141	Homologous_superfamily	Large ribosomal subunit protein uL10-like domain superfamily	Interproscan
IPR050323	Family	Universal ribosomal protein uL10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45699	60S ACIDIC RIBOSOMAL PROTEIN P0	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0002181	Biological Process	cytoplasmic translation	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0070180	Molecular Function	large ribosomal subunit rRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf9792_4.7 global RNA-seq network